Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq391 185 2e-41 seq1 152 9e-32 seq213 86.0 1e-11 >seq391 Length=841353 Score = 185 bits (204), Expect = 2e-41 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||| ||||| | || || || | || || || | ||||| ||||| Sbjct 251380 AATTTGTATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATT 251439 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||||||||| |||||||||||||| ||||||||||||| ||||| Sbjct 251440 GTAGTCTGACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTG 251499 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || |||||||| ||||| || ||||| ||||| | |||| ||| || || | Sbjct 251500 ATCAGGCGGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGT 251559 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || | ||| |||||||||||| |||||||||||||| ||||| Sbjct 251560 GGGTTCTACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 170 bits (188), Expect = 3e-37 Identities = 180/237 (76%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | |||||| || | || ||||| | ||||| ||||| Sbjct 251152 AATTTGCATACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATT 251211 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||||||||| ||||| |||||||| ||||||||||||| |||||| Sbjct 251212 GTAGTCTGACAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTG 251271 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| || || ||||| | |||| | | |||||| ||| Sbjct 251272 GTCTGGCGGAATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTT 251331 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || |||| |||| ||||||| || |||||||| ||||| || Sbjct 251332 GGGTTCGACTTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Score = 165 bits (182), Expect = 1e-35 Identities = 180/238 (76%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182 ||||| | || || |||||||| || | ||||||||||| || | || || ||| | Sbjct 250924 TAATTAAAAT-CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGT 250982 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | || || || || || | |||||||| | ||| ||||| ||||||||||| | ||||| Sbjct 250983 TGTAATCTGACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTT 251042 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 ||||||| || || ||||||||||| || ||||| ||||| | || ||| |||||| Sbjct 251043 GATCAGGCGGAATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGT 251102 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| |||| ||| |||| ||||| | ||||||||||| |||||||| Sbjct 251103 TTGGCTCTACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| | ||||| || | ||| | ||| | ||||| || || |||||||| Sbjct 730825 ACCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGA 730884 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||||||| ||| || || |||||||| | ||| || ||||| || || Sbjct 730885 TAAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGG 730944 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| ||||| ||||||||||| || |||||| || | || || Sbjct 730945 AATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || ||||||| ||||| || || || ||||| Sbjct 731005 CTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 >seq1 Length=3593316 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | |||| ||||||||| | || || ||| || Sbjct 1032046 AATTTGCATACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTT 1032105 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||| || ||||| ||| || ||||| ||||||||||| || |||| || || Sbjct 1032106 GTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTG 1032165 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||| ||||| || || ||||||| ||||| |||| || ||||| || Sbjct 1032166 ATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGA 1032225 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| | || ||||||||||| || || ||||| || || |||||||| Sbjct 1032226 TGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | ||||| | | ||| | ||||| ||| ||||| | ||||| || |||| Sbjct 1031592 TTTAGTTTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTAT 1031651 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | ||||| || |||| | ||| || ||||||||||||||||| || || | ||| |||| Sbjct 1031652 AATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGAT 1031711 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || || |||||||| ||||| ||||| | ||| | |||| |||||||| || | Sbjct 1031712 CTGGTGGAATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATG 1031771 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| | || || |||||||| || | |||||||| || ||||||||| Sbjct 1031772 GTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | || | ||||| ||||||||| | || || |||||| Sbjct 1033245 AATTTGCATACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATT 1033304 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||||| || || | | ||| || |||||||| || ||||| || |||| || || Sbjct 1033305 ATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTG 1033364 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||||||||| ||||||| ||| | |||| || || || || Sbjct 1033365 ATCTGGTGGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGA 1033424 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | ||| || |||||||| || | |||||||| || |||||||| Sbjct 1033425 TGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || | ||||| |||||| || | |||||| || || Sbjct 1032274 AATTTGCATACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTT 1032333 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || ||||| || | | ||| ||||||||||| |||||||| || || | || || Sbjct 1032334 GTAATCCGATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTG 1032393 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| |||||||| || ||||| | || | |||| || ||||| || Sbjct 1032394 GTCTGGTGGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGA 1032453 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||| || || |||||||| || | ||||| || || |||||||| Sbjct 1032454 TGGTTCAACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || | ||||| ||| || || | ||||| ||||| Sbjct 1033017 AATTTGCATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATT 1033076 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || || |||| ||| || | |||||| || ||||| || |||| || || Sbjct 1033077 ATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTG 1033136 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||||||||| || ||||| | ||| | |||| ||||| || || Sbjct 1033137 ATCTGGTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGA 1033196 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | ||| || ||||| || || | |||||||| || |||||||| Sbjct 1033197 TGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | ||||| | ||| ||||| | ||| | ||||| ||| || Sbjct 1032502 AATTTGCATACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTT 1032561 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || |||| ||| || | ||||| || || ||||| || | || || Sbjct 1032562 GTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTG 1032621 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||||||||| ||||| ||||| | || | |||| ||| ||||| || Sbjct 1032622 GTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGA 1032681 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || || |||||||| || | ||||| ||||| || ||||| Sbjct 1032682 GGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || |||||||||||||| ||||||| ||| | |||| ||| ||||| || | |||||| Sbjct 1032919 ATACCTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCTGATGGTTCAACT 1032978 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || |||||||| || | ||||| ||||| ||||||||| Sbjct 1032979 TCCAATGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATTTGCATT 1033026 >seq213 Length=107296 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 159891 GATGAAGTAATTCATCTATTATTTTCTGCAAATAGATGGGAAAAATATAATGAAATAATT 159950 ||| | || |||||| | ||||| |||| ||| |||||||||||| | || |||| || Sbjct 8819 GATCATGTTATTCATTTGTTATTCACTGCTAATCGATGGGAAAAATTTGATCAAATGATA 8878 Query 159951 AAAACGTTAGAAATGGGTATTACTATAATTATGGATAGATATTGCTATTCCGGAGTAGCT 160010 ||| | || || |||| ||| || |||| ||| |||||| ||||| || ||||| Sbjct 8879 GAAATGATAAAAGCCGGTACTACATTAGTTATTGATCGATATTCATATTCTGGTGTAGCC 8938 Query 160011 TATTCAGCATCTAAAGGTATTGATATAAATTGGTG 160045 ||| | |||||||| | ||| | ||||||| Sbjct 8939 TATACCAGTGCTAAAGGTTTAGATTTTGATTGGTG 8973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899639533211040