Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1 277 3e-69
seq391 107 3e-18
>seq1
Length=3593316
Score = 277 bits (306), Expect = 3e-69
Identities = 597/880 (68%), Gaps = 14/880 (2%)
Strand=Plus/Minus
Query 17862 CTTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920
|||||||| ||||| | || ||| || || ||||||| || ||||| |||||||||
Sbjct 930120 CTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATT 930061
Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980
| |||||||||||||||||| || |||||||||| |||||| ||||||
Sbjct 930060 TGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACC 930001
Query 17981 AATAATCTATCTGCTACAA-ATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039
||||| | ||| || |||| |||| | ||| | ||||| || | ||||||||| |
Sbjct 930000 AATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGAT 929942
Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099
| | | |||| ||||| ||| |||||||| || || | ||||| || | ||
Sbjct 929941 CAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAAT 929882
Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTG-ATTATAATATAATAAAC 18158
|| || | || | || || || | | ||| | || || | | || | ||
Sbjct 929881 AAT-TTCA--ACAATTCGTTGTGATGATGGACGA-TTACGAATATGATGAAACAAAAGAC 929826
Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218
| ||||||||| ||||| |||||||| | || || ||||| || ||| || | |
Sbjct 929825 AGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGAC 929766
Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278
| ||||||| || | ||||||||||||||| || | ||| || || ||||| ||||
Sbjct 929765 CAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATA 929706
Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT-ATTGCTCA- 18335
| || ||||| ||| || || || ||||| | ||| ||||| |||| | | ||
Sbjct 929705 TTCCTTCAACAGCA-GCAAATGCAATTAAACGTTCGGCAAA--TGTAACCGAATCATCTT 929649
Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395
|| |||| | ||||||| ||| | ||| |||| | | ||||||||
Sbjct 929648 GTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCAT 929589
Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455
| || | | ||||| ||| || ||| || ||| || | || || || |||||||
Sbjct 929588 TGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACA 929529
Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515
|||| ||||| | |||| ||||| || ||||| | |||||| | | || || ||
Sbjct 929528 TTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTA 929469
Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575
||| | || | | ||| | ||| | ||||| |||||||| ||||| ||| | |
Sbjct 929468 TTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAG 929409
Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635
| ||||| ||||| |||| | |||||||||||||||||| || | || ||||| |
Sbjct 929408 CAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAAT 929349
Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695
| | ||| | |||||| |||||||| ||||||||| |||| ||| || | ||
Sbjct 929348 GTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTT 929289
Query 18696 TGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAA 18735
|||||||| | ||||||| | || ||| || ||||| ||
Sbjct 929288 TGTACATTGTCCAAATATCATGATATTGAATTGGAAACAA 929249
Score = 152 bits (168), Expect = 8e-32
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| |||||||| ||||| ||||| || ||||||||| ||
Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||| |||||| |||||| || ||||||||||| || || ||||| ||
Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| ||||||| | ||| ||||| || ||||||||| | |||| || || |||||||||
Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
||| ||||| | || | ||||| || ||
Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGTATT 1033042
Score = 132 bits (146), Expect = 7e-26
Identities = 144/190 (76%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | |||||||||||||| ||||| || || || ||||||||| ||
Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||| || ||| ||||| ||||||||||||||||| || ||||| ||
Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| ||||||| | ||| ||||| || | |||||| | ||||| || |||||||||
Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302
Query 156003 ATATCCAAAG 156012
|| || ||||
Sbjct 1033301 AT-TCAAAAG 1033293
Score = 122 bits (134), Expect = 1e-22
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| | || || |||||||||||||| |||||||| |||
Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| || ||| ||||| || || ||||| || || || ||||| ||
Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| ||||||| | |||||| ||||| | |||||| |||||||| || ||||| ||
Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTA 156035
|| || ||| || |||| | ||||| || |||
Sbjct 1032102 AT-TCAAAAGGAATCGACATTGCATTTGGTTTTA 1032070
Score = 122 bits (134), Expect = 1e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | |||||||||||||| ||||| || |||||||| || ||| |||
Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| ||||| ||||| || |||||||| || || || ||||| ||
Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | ||||||||| || | |||||| | || ||||| ||||| ||
Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| |||||| | || | ||||| || ||
Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATT 1032299
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || | ||||||||||| || ||||| || || || ||||| ||| ||
Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| ||| ||| || ||| ||||| ||||| |||||||| || || ||||| ||
Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| | ||||| | |||||| || || | |||||| |||| || || ||||||||
Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
|| ||||| |||| | ||||| || ||
Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATT 1031615
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | ||||| |||||||| ||||| || ||||| ||||| ||| ||
Sbjct 1033026 AATGCAAATTTTTGTGAAAACCTTGACTGGTAAAACCATCACATTGGAAGTTGAACCATC 1032967
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929
|||| ||| ||| |||||| ||||| |||||||||||||| ||
Sbjct 1032966 AGATACAATTGAAAATGTGAAAGCCAAAATCCAAGATAAAGAAGGTAT 1032919
>seq391
Length=841353
Score = 107 bits (118), Expect = 3e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| ||||| ||||||| |||| | | ||||| ||
Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || |||||||| ||||| || ||||||||||| || || || || |||
Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | || |||| ||| || ||||| || || ||| | | || || |||||||| ||
Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAAC 250981
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| || ||| || | || | ||| | ||||| | || ||||| ||
Sbjct 250980 AT-TCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGG 250934
Score = 93.3 bits (102), Expect = 6e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | |||||||| || || || | ||||| | || || ||| |
Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| | | |||| ||||| ||||| |||||||| || || || || ||
Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||| | |||| ||| |||||||| || || || | | | |||||||| || || ||
Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
|| ||||| | || ||||||||||| | | | ||||| ||||
Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGTG 730824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731859905815200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |