Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 277 3e-69 seq391 107 3e-18 >seq1 Length=3593316 Score = 277 bits (306), Expect = 3e-69 Identities = 597/880 (68%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 17862 CTTTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 |||||||| ||||| | || ||| || || ||||||| || ||||| ||||||||| Sbjct 930120 CTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATT 930061 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | |||||||||||||||||| || |||||||||| |||||| |||||| Sbjct 930060 TGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACC 930001 Query 17981 AATAATCTATCTGCTACAA-ATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||||| | ||| || |||| |||| | ||| | ||||| || | ||||||||| | Sbjct 930000 AATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGAT 929942 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 | | | |||| ||||| ||| |||||||| || || | ||||| || | || Sbjct 929941 CAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAAT 929882 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTG-ATTATAATATAATAAAC 18158 || || | || | || || || | | ||| | || || | | || | || Sbjct 929881 AAT-TTCA--ACAATTCGTTGTGATGATGGACGA-TTACGAATATGATGAAACAAAAGAC 929826 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||||||| ||||| |||||||| | || || ||||| || ||| || | | Sbjct 929825 AGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGAC 929766 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||||| || | ||||||||||||||| || | ||| || || ||||| |||| Sbjct 929765 CAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAAATA 929706 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT-ATTGCTCA- 18335 | || ||||| ||| || || || ||||| | ||| ||||| |||| | | || Sbjct 929705 TTCCTTCAACAGCA-GCAAATGCAATTAAACGTTCGGCAAA--TGTAACCGAATCATCTT 929649 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 || |||| | ||||||| ||| | ||| |||| | | |||||||| Sbjct 929648 GTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCAT 929589 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | ||||| ||| || ||| || ||| || | || || || ||||||| Sbjct 929588 TGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACA 929529 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||| ||||| | |||| ||||| || ||||| | |||||| | | || || || Sbjct 929528 TTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTA 929469 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 ||| | || | | ||| | ||| | ||||| |||||||| ||||| ||| | | Sbjct 929468 TTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAG 929409 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | ||||| ||||| |||| | |||||||||||||||||| || | || ||||| | Sbjct 929408 CAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAAT 929349 Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695 | | ||| | |||||| |||||||| ||||||||| |||| ||| || | || Sbjct 929348 GTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTT 929289 Query 18696 TGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAA 18735 |||||||| | ||||||| | || ||| || ||||| || Sbjct 929288 TGTACATTGTCCAAATATCATGATATTGAATTGGAAACAA 929249 Score = 152 bits (168), Expect = 8e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||| ||||| ||||| || ||||||||| || Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| |||||| |||||| || ||||||||||| || || ||||| || Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||| ||||| || ||||||||| | |||| || || ||||||||| Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| ||||| | || | ||||| || || Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGTATT 1033042 Score = 132 bits (146), Expect = 7e-26 Identities = 144/190 (76%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || || || ||||||||| || Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||||||||||||||| || ||||| || Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||| ||||| || | |||||| | ||||| || ||||||||| Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 1033301 AT-TCAAAAG 1033293 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || |||||||||||||| |||||||| ||| Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| ||||| || || ||||| || || || ||||| || Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | |||||| ||||| | |||||| |||||||| || ||||| || Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| || |||| | ||||| || ||| Sbjct 1032102 AT-TCAAAAGGAATCGACATTGCATTTGGTTTTA 1032070 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || |||||||| || ||| ||| Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| ||||| ||||| || |||||||| || || || ||||| || Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||||||| || | |||||| | || ||||| ||||| || Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || | ||||| || || Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATT 1032299 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||||||||| || ||||| || || || ||||| ||| || Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| ||||| ||||| |||||||| || || ||||| || Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | |||||| || || | |||||| |||| || || |||||||| Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| |||| | ||||| || || Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATT 1031615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| |||||||| ||||| || ||||| ||||| ||| || Sbjct 1033026 AATGCAAATTTTTGTGAAAACCTTGACTGGTAAAACCATCACATTGGAAGTTGAACCATC 1032967 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 |||| ||| ||| |||||| ||||| |||||||||||||| || Sbjct 1032966 AGATACAATTGAAAATGTGAAAGCCAAAATCCAAGATAAAGAAGGTAT 1032919 >seq391 Length=841353 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| ||||||| |||| | | ||||| || Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||||| ||||| || ||||||||||| || || || || ||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| ||| || ||||| || || ||| | | || || |||||||| || Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAAC 250981 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| || | || | ||| | ||||| | || ||||| || Sbjct 250980 AT-TCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGG 250934 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | |||||||| || || || | ||||| | || || ||| | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| | | |||| ||||| ||||| |||||||| || || || || || Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | |||| ||| |||||||| || || || | | | |||||||| || || || Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || ||||| | || ||||||||||| | | | ||||| |||| Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGTG 730824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731859905815200