Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 327 2e-84 seq391 163 5e-35 >seq1 Length=3593316 Score = 327 bits (362), Expect = 2e-84 Identities = 609/900 (68%), Gaps = 17/900 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| ||||| | ||| |||||| ||||| |||| ||| ||||||||||||||| Sbjct 930118 TTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTG 930059 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||||||||||||||||||| | || ||||||| |||||| | ||| ||| || | Sbjct 930058 TTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACA-ATCTAATTCAACCA 930000 Query 38950 ATAATCTATCGGCCACAA-ATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 |||| | |||||| |||| |||||| ||| | ||||||||| | ||||||||| | Sbjct 929999 ATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATC 929941 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 ||| | |||||||||||| || |||||||| ||| || | ||||| | |||| Sbjct 929940 AATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATCAATAATA 929881 Query 39069 atcataattatattatt--ttttgataatttatattta---atatgattcgcatataGTA 39123 || || | ||| || |||| || | ||| ||||||| | | | | Sbjct 929880 AT-----TTCAACAATTCGTTGTGATGATGGACGATTACGAATATGATG---AAACAAAA 929829 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 ||| |||||||| |||||| ||||| || | || || |||||||| ||| || | Sbjct 929828 GACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAA 929769 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 || ||||||| || | ||||| |||||||| |||| |||||| || ||||| | Sbjct 929768 GACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAAA 929709 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 |||| || || ||| |||||||| |||| | | | |||| | | ||||||| Sbjct 929708 ATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCTT 929649 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 ||||| ||| ||||| | |||||||| | | | |||||| ||| |||||| | Sbjct 929648 GTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGCAT 929589 Query 39364 TAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 | |||| || ||||||| Sbjct 929588 TGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATACA 929529 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 |||| ||||| ||| ||| ||||| ||||||||| |||||| | |||||||| Sbjct 929528 TTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGGTA 929469 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 || || || || || |||||| ||||||| ||| |||||||||||| ||| | Sbjct 929468 TTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACTTGCAG 929409 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG 39603 | || || || || |||| | ||| |||||||||||||| ||||| || | |||| Sbjct 929408 CAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCAAT 929349 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 | ||||||| | || |||||||||||| | ||||||||| |||||| | | ||||| Sbjct 929348 GTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTTTT 929289 Query 39664 TATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTATTTT 39723 | |||||| | |||||| || || ||| ||||| || ||| | || || | ||||| Sbjct 929288 TGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACAAAACGATTTGGATTTT 929229 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || ||||| ||||| || || | || || |||||||||||| Sbjct 1033252 ATACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCG 1033311 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||||||||||||||||||| || |||| || || || ||| Sbjct 1033312 GACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGT 1033371 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 1033372 GGAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCG 1033431 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||||||||| |||||||| | ||| || ||||| Sbjct 1033432 ACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | |||||| ||||| |||||||| || | ||||| || |||||||| || Sbjct 1031600 CCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGAC 1031659 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | ||| | || ||||||||||| || ||||| || || | ||| || || ||||| Sbjct 1031660 AATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGA 1031719 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| ||| ||||| |||||||| || | ||| ||| Sbjct 1031720 ATACCTTCTTTGTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACT 1031779 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | || ||||||||||| || |||||||| | ||| || |||||| Sbjct 1031780 TCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || ||||| |||||||| || | ||||| ||||||||||| || || | ||| | Sbjct 1033039 CGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCA 1033098 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||||||||||||||| || |||| || || || ||||| || ||||||||| Sbjct 1033099 TCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTA 1033158 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| ||| ||||| ||||| || || | ||| ||||| | ||||||| Sbjct 1033159 TCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATG 1033218 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||| | ||| || ||||| Sbjct 1033219 GTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || ||||| ||||| ||||| | |||||| || || ||||| Sbjct 1032281 ATACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCC 1032340 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||||||||| ||||| || || | || ||||| ||| Sbjct 1032341 GATAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGT 1032400 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || ||||| || ||||| || ||||| || | ||| Sbjct 1032401 GGAATTCCCTCTTTATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCA 1032460 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || |||||||||||||| |||||||| | ||| || ||||| Sbjct 1032461 ACGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || |||||||| || | ||||| |||||| ||||| Sbjct 1031825 ATTCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCG 1031884 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || ||||||||||||||||| ||||| || | || || || ||| Sbjct 1031885 GATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGT 1031944 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||||||||| || ||||| || | || Sbjct 1031945 GGAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCG 1032004 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||||| || || | ||| || ||||| Sbjct 1032005 ACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | ||| ||||| | ||| | || | ||||| ||| || ||||| Sbjct 1032509 ATACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCC 1032568 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || | ||||| ||||| ||||| || | || ||||| ||| Sbjct 1032569 GACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGT 1032628 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| || ||||| || ||||| || | ||| Sbjct 1032629 GGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCC 1032688 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||||||||| || ||||| | || |||||||| Sbjct 1032689 ACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 >seq391 Length=841353 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||| |||| ||||| ||||| || | ||||| ||||| || ||| Sbjct 251387 ATACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCT 251446 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || || || |||||||| |||||||||||||||| ||||| ||||| Sbjct 251447 GACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGC 251506 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || ||||| |||| ||||| || || || | | |||| Sbjct 251507 GGAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCT 251566 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || | ||| ||||||| ||||||||||| | ||||||||||| Sbjct 251567 ACCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||||||||| | ||||| ||||| || | ||||| ||||| || ||| Sbjct 251159 ATACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCT 251218 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || || || || ||||| |||||||||||||||| ||||||||| || Sbjct 251219 GACAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGC 251278 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| | |||||| | ||||| || | ||| Sbjct 251279 GGAATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCG 251338 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 ||||| | || || |||| || ||||| || || Sbjct 251339 ACTTCCAAAGATATATTTTTTCCTGTTAAGGTCTT 251373 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||| || | |||||||| | || | ||||| || || || || || Sbjct 730825 ACCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGA 730884 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | ||| || | ||| |||||||||||||| | ||| || || || || || Sbjct 730885 TAAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGG 730944 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| ||||| |||| | ||||| || | ||| || Sbjct 730945 AATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||| | || || ||||||||||| | ||| |||||||| Sbjct 731005 CTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || || || | ||| ||||| | || || ||| || |||||||| Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || || || | ||| || |||||||||||||| | |||||| ||||| || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||||||||| || ||||| |||| || | || ||||| | |||||| Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| |||| || || || ||||| | || || ||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905121042627600