Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 172 2e-37 seq1101 132 1e-25 seq1212 113 1e-19 seq768 87.8 5e-12 seq702 87.8 5e-12 seq448 87.8 5e-12 >seq1 Length=3593316 Score = 172 bits (190), Expect = 2e-37 Identities = 539/824 (65%), Gaps = 17/824 (2%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| || || || || |||| ||||| || || | ||| | || || Sbjct 3537252 TATTCCACAATTTCGGTACAAAGATTCGAACATTTGATTGTACCGAGATTTTGTTGATTT 3537193 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||||| | |||||| ||| ||||| | |||||||| ||||| || || || |||| Sbjct 3537192 GATTTTCGATTACAATGATCTTTGTAAACCATGTATGGTGTTCCAGTTTCGATTTGTGAT 3537133 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTG-TATCTGCCTTCCGA 155809 || ||||| | ||| || |||| ||| | ||| | | | |||| ||| Sbjct 3537132 TCAAGAATAGCAAACCAAAGAACACGAGCACGACATTG-TGATCGATATCGTTTTTCATT 3537074 Query 155810 CTCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||||| |||||| | | || | || ||||| |||||||| | || || Sbjct 3537073 TTCATAACCTTCATAAA--GTTTTTCAAATTCTTCACCCCAACAATCAAATAACCCGGGA 3537016 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT-TACACGCTCCATAAATAC 155926 || | || || || | || ||||| ||| || ||| ||| || | ||| |||| Sbjct 3537015 CATTCATGCGGACACATCAATGACCACATTCCATCTT-GATCTACGCGTTTCATGAATAA 3536957 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | |||||| || | || | ||| | ||||| ||| ||| Sbjct 3536956 ATCAGGAATCCATAGAGCATAAAATAAATCACGTGCACGTAGTTCCTCCGAACCGGTATT 3536897 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 || || || || || || ||||||| ||| ||| |||||||| || ||||| Sbjct 3536896 TTTGCGAAGACTTAGAAAATCAAAGATATCAGAATGCCATGGTTCCAGATAGATGGCAAA 3536837 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 ||| | ||| ||||| ||||| ||||| |||||||| |||||| | || | Sbjct 3536836 TGCTCCAGGACGTTTGTTACCACCTTGATCAACATATCGAGCAGTATTATTGTATACGCG 3536777 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||||||| | ||||| || | ||||| || ||| ||||| |||||| || Sbjct 3536776 TAGCATAGGAATCAAGCCATTAGAGATTCCATTTGTACCGGCAATATAACTACCAGAAGA 3536717 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | | |||||||| || ||||| ||||| | |||| || || || |||| Sbjct 3536716 TCGGATACAATGAATATTAAGACCAATGCCACCAGCTGATTTTGAGATGATGGCACATTG 3536657 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 || | |||| | ||||||||||| |||||| ||| | || ||| | || || Sbjct 3536656 TTTAAGCGTATCATATATACCTTCAATGCTATCATCACTCATAGTGAGCAGAAAACATGA 3536597 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 |||||| || ||| |||||| || ||||| | ||||||| |||||| |||| | Sbjct 3536596 TGATAATTGCGGCCGTTTTGTTCCGGCATTGAACAACGTAGGTGATGCATGTGTAAACCA 3536537 Query 156344 CTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTC-TCAAGATTAGACCCGTGAAT 156400 || | || || ||| ||||| || ||| | | |||| || | | ||||| Sbjct 3536536 ATTTTCCGATATCAAATTATATGTTTC---AATGGCAGCATCAATATCATCACGATGAAT 3536480 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAA 156444 || |||| | |||| ||||||||||||| | ||||||| Sbjct 3536479 ACCAATAGCACAACGCATCAACATATGCTGAGGTCTTTCTACAA 3536436 Score = 132 bits (146), Expect = 1e-25 Identities = 378/572 (66%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAG 133129 ||| | |||||| |||| |||||| | | | || |||||| ||||| |||||| Sbjct 929237 AATCGTTTTGTTTTGTTTCCAATTCAATATCATGATATTTGGACAATGTACAAAAAAGCT 929296 Query 133130 CAAGATTTATTTTGGAC--TTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGG 133187 ||| | ||||||||| || || ||||||||| || | | || | | || ||| Sbjct 929297 GAAGCATCATTTTGGACAGTTGAA--GAAGTAGATCTAAGCCATGATCTTGTACATTGGA 929354 Query 133188 AAGCCCTTACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCG 133246 | | | | | ||||||||||||| ||||| ||| | || || ||||||||||| Sbjct 929355 ATAAATTAAATTCGAATGAAAAACATTTCATTTCACATG-TATTGGCTTTTTTTGCTGCA 929413 Query 133247 AGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 ||||||||||||||| ||||||||||| ||| ||||| | || || ||| | | Sbjct 929414 AGTGATGGTATTGTTAATGAAAATTTAGCTGAACGTTTTATTCGTGATGTACAAATACCA 929473 Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 ||||| ||| |||||||| | || ||||| || |||||| | ||||| | ||| Sbjct 929474 GAAGCACGTTGTTTTTATGGATTTCAAATTGCTATCGAAAATGTTCATTCAGAAATGTAT 929533 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACA--AACTATTCAACG 133424 || | ||| |||| || | ||| ||| ||| | | |||||||| | Sbjct 929534 TCATTATTGATTAATACCTATGTATCGGAT--CGTAATGAACAAGATTTTCTATTCAATG 929591 Query 133425 CCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGG 133484 | || | | | |||||| | | || ||| || | |||||||| |||| || | Sbjct 929592 CTATACGTAATCTACCTTGTGTAGAGAAAAAAGCTAAATGGGCTATACGTTGGACACAAG 929651 Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544 | | | | ||||| ||| | |||| ||||||| || || || || |||| Sbjct 929652 ATGATTCGGTTACATTTGCCGAACGTTTAATTGCATTTGCTGCTGTTGAAGGAATATTTT 929711 Query 133545 tCAGTGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 | ||| | || ||| | ||||||||||| ||||| ||||| | | ||||| || Sbjct 929712 TTTCCGGTTCATT-TGCAGCAATTTTTTGGCTAAAAAAACGTGGCCTAATGCCTGGTCTT 929770 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 ||||| || ||| | |||||| | || || Sbjct 929771 ACCTTTTCAAATGAATTGATTTCACGTGATGA 929802 >seq1101 Length=1082900 Score = 132 bits (146), Expect = 1e-25 Identities = 282/419 (67%), Gaps = 3/419 (1%) Strand=Plus/Minus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || |||| |||||||| || ||| ||||||||||| |||||| ||| |||| Sbjct 175396 TCTTCATGTCCGTGATTTTTTTTTAGTTCTAAGAATTCGAAAATATCCAAATGCCATGGC 175337 Query 156030 TCCAGATACATAGCAAA-ACTACCATTCCTCTT--GCCACCCTGATCTACATACCGAGCA 156086 |||||||| | ||||| | || ||| |||| ||||| || || ||||| || || Sbjct 175336 TCCAGATATACTGCAAAGCCGCCCTTTCGTCTTCCACCACCTTGGTCGACATAACGGGCG 175277 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || | |||||| || |||||||| |||| ||| ||| | | ||||| || || || Sbjct 175276 GTTTCATTGAAAACTTTGAGCATAGGTATAACACCGTTGCTAATACCATTTGTACCTTGA 175217 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 || | | || || || | ||||| ||| ||| |||| ||||||| ||||| Sbjct 175216 ATTTCAGTCCCGTGTGCCCGTATTTTATGTATAGCTAGCCCAACTCCACCTGCGTATTTA 175157 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 ||| ||||||| || | ||||| |||| || ||||| ||||| || |||| Sbjct 175156 CTAATAATTGCGCATTGTTTCAACGTATTATAAATTCCGTCAATTGAATCCGATTGCATT 175097 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | ||| || ||| | |||||| | ||| | || || || ||||| || Sbjct 175096 TGCAACAAATAACAGCTACTCATTTGAGGAAAGCGAGTTGCGGCATTAAACAGTGTGGGA 175037 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 ||||| ||||| || || || | | ||| ||||||||| ||||||| ||||| Sbjct 175036 GTTGCGTGAATGAAGTATTTCTGGCTGAGTAAATTGTATGTCTCAATAATCTTGTCAAG 174978 >seq1212 Length=1133891 Score = 113 bits (124), Expect = 1e-19 Identities = 218/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||||||||| ||||| ||||| || | | || |||| ||||| | || |||||| Sbjct 870044 CCAACAGCATCGATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCA 870103 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| ||||| || | |||| ||||||| ||||||||| ||| || ||| | Sbjct 870104 AACATATCTCGAACACGTGAAGGACCAACACCAACAAACATTTCTAGAAACTCGGAACCA 870163 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| ||||| | || || ||||| || ||| ||| | |||| | || || Sbjct 870164 GATACAGTGATGAAAGGCACTTTAGCTTCACCGGCTGTTGCTTTGGCCAACAAAGTTTTG 870223 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT- 289268 || || ||||||||||| || || | || ||||| | ||| || || | || Sbjct 870224 CCAGTACCAGGTGGTCCAGTTAGAAGTGCGCCTTTTGGAATTTTAGCACC----TAATTC 870279 Query 289269 -ATATTTC-TCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | || | | || | ||||| ||| | |||| |||| | ||| |||| ||||| Sbjct 870280 GGTGTATCGTGATGGATTTTTAAGAAAATTAACAAATTCCATTATTTCCAATTTAGCCTC 870339 Query 289326 ATCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 870340 TTCACAACCAGCCACATC 870357 >seq768 Length=1243675 Score = 87.8 bits (96), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||||| ||| || || || | || || || | |||| || || || ||| | || Sbjct 334857 GGCGAAAAGGCCGCAGTTGTCGCAGACGTGCGCAGTGTACGCGTCGGACAAGTCGAAGAG 334798 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | ||| || ||||| || ||||| |||||||| || || ||||||||||| || Sbjct 334797 GCGCTCTTTGAGGATGCGAGCGGCTCCGTGCGAAATCATGCAGTCGCGCTCCATTTCGCC 334738 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| || || || || |||| || || || ||||| || || || | | || Sbjct 334737 GAAGCGCAGCCCGCCCGCGCGCAGCCGGCCTTCCATGGGCTGCCGCGTAAGCGCAGCAAT 334678 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | |||||| || ||| || | ||||| |||||||| || |||||| | Sbjct 334677 GGGGCCGCGCGCGCGGCTGTGCACCTTGTCGTCGACCATGTGCTTGAGCCGTTGGTAGTA 334618 Query 251643 TGCGGGACCGATGAAGAT 251660 | || |||| |||||| Sbjct 334617 CGTAGGCCCGAAGAAGAT 334600 >seq702 Length=289099 Score = 87.8 bits (96), Expect = 5e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 233263 AAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACC 233322 |||| || |||||| || ||||| ||||||||||||||||||||||| ||| ||||| Sbjct 55467 AAATTGTGCAGCACCATGTGCAATTTGACAATCACGTTCCATTTCACCAAAACGAAGACC 55408 Query 233323 ACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAG 233381 ||||||| | | ||| | | || ||||||| | || | | | || || | | Sbjct 55407 ACCATCACGAGCACGACCTTCCATTGGTTGACGAACAAGAATCTGAAC-CGGTCCACGTG 55349 Query 233382 CACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAA 233441 |||| ||| ||||||||| | ||||||||| || | || |||||| ||||||| Sbjct 55348 CACGTGAATGAATTTTATCATCAACCATATGTTTTAATCGTTGATAATAGGTTGGACCAA 55289 >seq448 Length=62000 Score = 87.8 bits (96), Expect = 5e-12 Identities = 253/384 (66%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| | ||||||||| |||| || ||| ||| | | || | |||| | Sbjct 22484 TTGATTTAATGTTTGTTCTTCTTCACCACTTGTACCACCAGCCATACGTTCACCGCTACG 22543 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 |||| |||| | ||||| ||||| ||||| ||| | ||| || ||| || ||| || Sbjct 22544 TTTTCTACCGATCGCATCGATTTCATCAATATAAACAATACAAGGTGAACGTTTTCTTGC 22603 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 |||||||| |||| ||||| | ||| || |||||| || |||||| | |||||| Sbjct 22604 TTCGGCAAATAAATCTCGCACACGAGCTGCACCTAGACCACCAATCATTTCAATAAATTC 22663 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | | | ||| | ||| |||||| ||| || || | |||| | Sbjct 22664 CGAACCAT-TAATCGCTAGGAAAGGTACCGATGCTTCAGTTGCAACAGCTTTAGCCAACA 22722 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 || ||||| |||||||||||| | || || || |||||| ||| || |||| Sbjct 22723 TAGTTTTACCACATCCAGGTGGTCCTAAAAGTAATACGCCTCTTGGTATTTTAGCTCCCA 22782 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 || ||| || | || || || | | | || |||| |||| | |||| |||| Sbjct 22783 ACA-TTTTAAATCTTTCCGGTGATTTAAGATAATCAACAAATTCCATTATTTCAACTTTT 22841 Query 289321 GCCTCATCACATCCTGCTACATCA 289344 || || | | || || |||||| Sbjct 22842 GCTTCTTTTAAACCGGCAACATCA 22865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471792670169514