Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq335 154 2e-31 seq768 138 2e-26 >seq335 Length=939964 Score = 154 bits (170), Expect = 2e-31 Identities = 233/327 (71%), Gaps = 11/327 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||||| ||||||||| || | ||| ||||||| |||||||||||| Sbjct 900285 CCTTCGTCGCGCGAGATCAGTTCGTTGCTGAAACTGAGCCCGGGCAGCAGGCCGCGCTTC 900226 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| || || || ||| ||| |||||||| ||||| ||| ||| Sbjct 900225 TTGAGCCAGAAGATCGCGCAAAACGAGCCGCTGAACAAGATGCCTTCGACCGCGCAAAAC 900166 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| || || || || | | || | ||| || |||||||||| | ||||||| Sbjct 900165 GCGAGCAGGCGTTCCGCGAGCGAGTTCGAGCC-----TG-TGATCCACTTGACCGCCCAC 900112 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTG-TCGATGGCGC---GAAAGAGGTGGTCCTT 794576 || ||||| | |||| |||| |||| ||||| |||| | || | | | | Sbjct 900111 TCCGCCTTGCGTTTGACCGCCGGCA-CGTGCTCGATTGCGCGCAGCAACCGCAGCTTTTC 900053 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 ||| || | | | || |||||||||||| || | ||| ||||| ||||||||||| Sbjct 900052 GTCGGCCTGCTGCGCGAGGTAGGTGTCGATCAGCAAGCTGTACGTCTCCGAGTGGATGTT 899993 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAA 794663 ||| || || | |||||| | ||||| Sbjct 899992 TTCCATCGCAACCTGGAACGCGTAAAA 899966 Score = 150 bits (166), Expect = 3e-30 Identities = 197/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| |||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 179076 GCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGGCACGATCCCGTT 179017 Query 2073597 GGACT-CGCC-GTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCA 2073654 | || |||| ||| |||||||| | ||| ||| || ||||| | |||||| || Sbjct 179016 G--CTGCGCCCGTTCGTGCCCGCGATGTACGCGTTCGTCGCGCGGATCTTGTGGATCGCG 178959 Query 2073655 AAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATG 2073714 | ||||| ||||| || |||| ||| | |||||||| |||||||| ||| | ||| Sbjct 178958 AGCCCGATCCCGCCAGCGTACTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGAAAATG 178899 Query 2073715 CCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCC 2073774 ||||||||||||||| | ||| | || ||||||||| ||| || | ||| | Sbjct 178898 CCCTCGATCGAGTCGTCGGCCATCTGCAGCAGAAAGCAGCTGGAGAGCTGTTGCCGCTTC 178839 Query 2073775 GTGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||| ||||| ||||| |||||||| Sbjct 178838 AGCCCGGCGTTGAACAGCGTCGGCGTCGC 178810 Score = 140 bits (154), Expect = 5e-27 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 796177 AAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACG 796236 ||||||| ||| || ||||| ||||||||||||||| || |||||||| ||||| ||| Sbjct 899931 AAGCGGCTGGCGAGATTCTCGAGCACGATGCCGTCGCTCGCCGCGAAAAACGCGAGCACG 899872 Query 796237 TGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCG 796296 |||||||| ||||| ||||| |||| | |||| | |||||| | || |||||| Sbjct 899871 TGCTTGATGAAGTGCCGCTCACCGTCCTTCAGCGCGTCCCAGTCGTCCAAGTCGGCAGAC 899812 Query 796297 AGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTC 796331 ||||| | ||||||||||||||||||||||| || Sbjct 899811 AGGTCAATTTCCTCGGCGGTCCAAAAGGAGGCTTC 899777 Score = 131 bits (144), Expect = 3e-24 Identities = 366/547 (67%), Gaps = 36/547 (7%) Strand=Plus/Minus Query 2069252 GGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGG 2069311 |||| || || |||| ||| |||| | || | || ||||||| ||||| | || | Sbjct 180502 GGTCCACCGTGAACTTGATCGCGTCCGTCGCGCTCTGGATGCGCAGGTAGTAGAGTCCCG 180443 Query 2069312 TCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGA-------CTCGGCA 2069364 | ||||| || | ||||||||| |||||| ||| | | |||||| Sbjct 180442 TTTTGAGCCCTTGTTTCCACGCGTAAAAGTGCATGCTCGTCAGCGCACCAAAGCTCGGC- 180384 Query 2069365 TTCGGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCG 2069424 || | |||| | |||| ||||||||| |||| || | |||||||| || Sbjct 180383 --CGCG-CGGC---GAAGAGCGAGAGCGACTGCGACTGGCAGATGAACGGCGCGCGCGCG 180330 Query 2069425 GCCGCCATGTCGATG--GTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCT 2069482 ||| |||||||||| | ||| | | || |||||| ||||||||||| |||| Sbjct 180329 ACCGACATGTCGATGTAGCTGCGCTGCTTGAT--CTCCCAGGTCGTCTTGAACAGCGCCT 180272 Query 2069483 TGAGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCT-GCGCTGCGATG 2069541 | || || |||| | || ||| |||| |||||||||||| | | || |||||| Sbjct 180271 TCAGCGGCTGCGGGATTTCCTCG--ATCAG----CTGCACCGAGCCGTTGTGC-GCGATG 180219 Query 2069542 AGGCGGTCGCGAAAGT-CGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCG-ACCAGGT 2069599 || | | || || | || |||||| ||| || | | |||| | |||| || Sbjct 180218 AGCTGCT-GCTTCAGCGCCTCCGACCACAGCCCGAGCTTCGAGA-GCGCGAGCACCAAGT 180161 Query 2069600 GGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGA 2069659 | ||||| |||| || ||||| ||||||||||||||| | | ||| |||| Sbjct 180160 GCTTGTTGAGCACGCAGAACTCGCCGCTGAGCACGCGGCGCGTAAACACGTTCGACGTGT 180101 Query 2069660 TGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCG 2069719 |||| ||| |||| ||| || ||||||||||| |||| ||||| ||||| ||| Sbjct 180100 ACGGCTCGAACGACTCGCAGTTCCCGAGGATCTGCGAAGTCGACGCCGTCGGCATCGGCG 180041 Query 2069720 CCACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCC---CGCAGGGCGTCCC 2069776 | || ||||| ||||||||| ||||||| |||| |||| ||||| | |||| Sbjct 180040 CGACCAGCAGGCTGTTGCGCAGCCCGTACTTG---ACCATCGCCTCGCGCAGCTCCTCCC 179984 Query 2069777 AGTCCCA 2069783 ||||||| Sbjct 179983 AGTCCCA 179977 Score = 116 bits (128), Expect = 6e-20 Identities = 293/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 2071565 GCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCT 2071624 |||||| |||| || || || ||||||||||| | ||| ||||||| |||||| Sbjct 179521 GCGACGTGTACTGCACCACTTCCGTGCACAGGTTCGAGGACTGGATGGTGCCGAGGTTCC 179462 Query 2071625 GCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGA 2071684 ||||||| | ||||| |||||||||| || || ||| || |||||||||| Sbjct 179461 GCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTACACCAAGTACGGATTGCCCGTCTCGA 179402 Query 2071685 TCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGC-GCGG 2071743 |||||| | || ||| ||| ||| | |||||| |||| | | || ||| Sbjct 179401 TCTGCGTGTTCACAATGACCGTCCAGAGCGCGCGCGCCTTCACCT-GCCGCACGAAGCGC 179343 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 || | || ||||| || | ||||| | ||| || | Sbjct 179342 TGCTCGGCCTCGTAGCGCGTGTACAGCGCGTCGAACTCCGCGCCCCAGACTTCGAACAAG 179283 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 || |||| || | || || | || ||| ||||| | ||||||||||||| Sbjct 179282 CCCGGCGACTGCGCGGGACACATCAGACTCCACACGCCGTCTTCGTCCACGCGGCGCATG 179223 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 |||| |||| | |||| || ||||| || |||| || ||| || |||||| Sbjct 179222 AACAAGTCGTTGATGTACAGCCCCAGGAAGAGGTCCCGCGTGCGCAACTCTTCGTTGCCG 179163 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 ||||| ||| |||| | |||| || ||| ||||||||||||||||||||| Sbjct 179162 TGGTTGCGCCGCAGCTCGATGAACTCGAAGATGTCTGCGTGCCACGGCTCCAGGTAGATC 179103 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||| |||| ||||||||||||||||| Sbjct 179102 GCGAAGCCGCCTTTGCGCTTGCCGCCGCC 179074 Score = 96.9 bits (106), Expect = 5e-14 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCT-CGAGCGAGATCAACTCCAT 793966 || || || |||||| ||||||||||| || ||||||| | ||| | |||| |||||| Sbjct 900591 TAGTCTCCGACGCGCTTTTCGAAAAAGTTCGTTTTGCCCTGCAAGCTA-ATCATCTCCAT 900533 Query 793967 CCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCG 794026 ||| ||||||||| || |||| | |||| | || | || | ||||| || Sbjct 900532 CCAGCTGAACGGGTTTTGCGAGCCGTAGAACGGCTCGTAGCCCACGGAGGTGAGCAGCCG 900473 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCAC 794086 ||||| ||| | || | |||||| ||| | | | |||||||||||||| ||| | | Sbjct 900472 GTCGGTAACGCACTCCAGGTACTGCACCATCAAGTCTGCGTTCATGCCGATCAGCCCGGC 900413 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATC 794141 ||||||| |||| ||| || | ||| | |||| |||||| || |||| Sbjct 900412 CGGCAGCGCCTCGGTGATGAAGTGGCGCTCTACGTCGAGCGCCTCGCAGACGATC 900358 >seq768 Length=1243675 Score = 138 bits (152), Expect = 2e-26 Identities = 209/291 (72%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 429527 CGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCA 429586 ||||||||| ||| ||| |||||||||| |||| || | ||||||||||| ||||| || Sbjct 884392 CGTCGAGCGGCACTTGCTCACCGGCGACTTCGTGCTCTTCAACCGGCAGCCCTCGCTGCA 884451 Query 429587 CATGGGGTCGATGCTCAACCACAAGGTG---GTGCCCATGCCCGG-TCGCACCTTCCGGC 429642 || | | || | |||| ||| ||| |||||| ||| |||||||| Sbjct 884452 CAAGATGAGCATCATGGGCCACCGCGTGCGCGTG---ATGCCCTACTCG-ACCTTCCGCG 884507 Query 429643 TCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 429702 | ||||| ||| || | |||||||||||||| |||||||||||||||||||||| Sbjct 884508 TGAACCTCAGCGTCACCTCGCCGTACAACGCCGACTTCGACGGCGACGAGATGAACCTGC 884567 Query 429703 ACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATG-GGCGTGGCCCTC 429761 || || | ||| || | ||| ||||||||| || ||| | || | |||| || || Sbjct 884568 ACCTGGCGCAGACGCACGAGGCGCGCGCCGAAATCCGGCAC-CTGTGCGCCGTGCCCTTC 884626 Query 429762 AAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGAC 429812 || ||| ||||||||| |||||||||| | || || | ||| |||| Sbjct 884627 CAGATCGTCTCGCCGCAGAGCAACAAGCCCGTGATGGGCATTGTGCAGGAC 884677 Score = 113 bits (124), Expect = 7e-19 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 429029 GCGGTCGGGCAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGAT 429088 ||||||| ||||||| | || || | ||| || || || ||||||||||||||| | Sbjct 884044 GCGGTCGCGCAAGCCGATGAAAAGCATTCGGGAACGCTTGAAAGGCAAGGAGGGCCGGCT 884103 Query 429089 CCGCGGCAATTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGA 429148 |||||||| |||||||||||||| |||| | |||||| ||||||||| ||| Sbjct 884104 GCGCGGCAACCTGATGGGCAAGCGCGTGGACTTCAGCGCGCGCACCGTCATCACCGGCGA 884163 Query 429149 CCCCGAAATCGACATTGACGAGGTGGGCGTGCCCTATGAG-ATCGTCAAGACGCTCACCT 429207 ||| | ||||| | ||||| || ||||||||| || || |||| | | || || | Sbjct 884164 CCCTAACATCGAGCTGGACGAAGTCGGCGTGCCC-ATCAGCATCGCGATGTGCCTGACGT 884222 Query 429208 TTCCCGAGCGCGTGAC 429223 | ||||||| ||||| Sbjct 884223 TCCCCGAGCTAGTGAC 884238 Score = 107 bits (118), Expect = 3e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 431021 GCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGAT 431080 |||||| ||||||||||| || |||||||||||| || ||||| | ||| ||| | Sbjct 885559 GCCCGACAGCCGCGGCTTCGTCCGCAACTCGTACCTGCAGGGCCTGACGCCGCAGGAGCT 885618 Query 431081 GTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGA 431140 ||| | ||| ||| ||||| ||||| || || ||||||| || ||| || |||| Sbjct 885619 GTTCTTCCACGCGATGGGCGGCCGCGAAGGCATCATCGACACTGCGTGCAAAACCTCCGA 885678 Query 431141 GACGGGCTACATCCAGCGTCGG 431162 ||| |||||||||||||||||| Sbjct 885679 GACCGGCTACATCCAGCGTCGG 885700 Score = 91.5 bits (100), Expect = 2e-12 Identities = 213/312 (68%), Gaps = 21/312 (7%) Strand=Plus/Plus Query 653528 AAGCGCGACAAGTCGACCATCCTGCGCACCAACGAGGCCGCCACGGTGCACCGCGTCGTG 653587 ||||||||| ||||||||| ||||| |||||||| || | | | || |||| || Sbjct 334147 AAGCGCGACGCGTCGACCATTTTGCGCTCCAACGAGAACGGCGTGATCGACAGCGTGCTG 334206 Query 653588 GTGACGCGCAACGGCG--ACGGCGCCAACGCGGT-CAAGATCGTCACC---CGCGCCATG 653641 | | || ||||| | || || ||||| | | || |||| ||| ||| Sbjct 334207 CTCA---GCTGCGGCGTGAAGG-GC--ACGCGCTTCGCGAAAGTCAAAGTACGCAGCATT 334260 Query 653642 CGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG- 653700 ||| ||| || | |||||||| | | |||||||||||||| || |||||| | || Sbjct 334261 CGCGTGCCGCAGATTGGCGACAAGTTCGCCTCGCGCCACGGGCAGAAAGGCACCATTGGG 334320 Query 653701 --CAGCGTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGAC 653758 || ||||| | | || || |||||| |||||| ||| | |||||||||| Sbjct 334321 TTCACGCTGCGC-CAA--GAAGACCTGCCGTTTTCGCCGGACGG---CATCACGCCCGAC 334374 Query 653759 ATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCC 653818 | | || |||||||||||| | || |||||||||||||| || | || | ||| | Sbjct 334375 TTGTTGATGAACCCGCACGCCGTGCCCTCGCGCATGACCATTGGACATTTGGTAGAGTGC 334434 Query 653819 CTCCTGGGCAAG 653830 || |||||||| Sbjct 334435 TTCTTGGGCAAG 334446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916105772830358