Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq558 132 3e-26 seq768 131 1e-25 seq1 87.8 1e-12 seq391 82.4 5e-11 >seq558 Length=611125 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| |||||| ||| ||| ||||||||||| ||||||| || |||| | || Sbjct 303926 CAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTC 303867 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||| || ||||| || || ||||||| || |||||||| |||| | ||||| ||||| Sbjct 303866 GTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTC 303807 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | |||| || || | || || || | |||||| | Sbjct 303806 CTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTT 303747 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| |||||||| ||||| ||||| |||||||| || Sbjct 303746 CTTGCCCGTGAGTGTCTTGACAAATATCTGCATCAT 303711 >seq768 Length=1243675 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || || ||| |||| ||| || || |||||| || ||||| ||||||| Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||||| | || |||| ||||| ||||| || ||||| || |||||||| |||| Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || ||||||| | |||| || || | || || Sbjct 1130816 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACC 1130875 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||| ||| ||| |||| |||||||| ||||| || ||||| ||||| || Sbjct 1130876 TCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCATCAT 1130925 >seq1 Length=3593316 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| || || || | | | |||| |||| |||||||||||| ||| Sbjct 1032092 TCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAG 1032151 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||||||| ||| | || | ||||| ||||| | ||||| ||| || | Sbjct 1032152 ATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTT 1032211 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| ||| | |||||| || | || || || || || || || || || || Sbjct 1032212 TCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACG 1032271 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 1032272 AAAATTTGCAT 1032282 >seq391 Length=841353 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||||| ||||||| || ||||| || || | || | ||||| |||||||| || || | Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGAT-TCCTTTTGAATGTTGTAATCTG 250991 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | ||| |||||| ||||||||||| || || || | || || || || ||| Sbjct 250992 ACAATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCG 251051 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||| || || || | ||||| ||| ||| | | || | || || | ||| | Sbjct 251052 GAATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTA 251111 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | | || | ||||| || | || |||||||| || ||||| Sbjct 251112 CTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687552478318