Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq391 181 2e-40 seq1 159 5e-34 >seq391 Length=841353 Score = 181 bits (200), Expect = 2e-40 Identities = 183/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| |||||||||||||||| |||| ||| | |||| ||||||| | | Sbjct 251615 TGCAGATATTTGTAAAAACATTAACAGGTAAAAATATTTCGCTTGAGGTAGAACCCACTG 251556 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| |||| ||||| || ||| ||||| ||||| || ||||||| Sbjct 251555 ACACAATTGAAAATGTGAAAACGAAAATTCAGGATAAGGAAGGAATTCCGCCTGATCAAC 251496 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | |||||||| || ||||||||||| ||| |||||| || |||| || |||| Sbjct 251495 AACGATTAATTTTTGCTGGAAAACAATTAGAAGATTCTAGAACTTTGTCAGACTACAATA 251436 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||||||||| | || ||||| |||| | |||||||||| | |||| || Sbjct 251435 TCCAGAAAGAATCGACGTTACACTTAGTGCTACGGCTTAGAGGAGGTATACAAATTTT 251378 Score = 141 bits (156), Expect = 1e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || |||| || ||||||||||||| || || | || || |||| ||||| Sbjct 251385 CAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAACGAC 251326 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 |||||| | | |||||| | ||||| || |||||||| ||||| || || ||||| Sbjct 251325 ACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAACAG 251266 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 || | |||||||| || ||||| ||||| ||| |||||| || |||| || ||||| Sbjct 251265 CGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAGACTACAATATC 251206 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || |||||||| || | || ||||| | ||| | ||||| |||| Sbjct 251205 CAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGGTA 251160 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | |||||||||||||| || | ||||| | || || |||| || | Sbjct 731051 TGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAATG 730992 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | | |||| ||||| ||| |||||||| ||||| || ||||| | Sbjct 730991 ACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAGC 730932 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| |||||||| ||||| ||| |||| || || | || ||| | || || || | Sbjct 730931 AAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAACA 730872 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || |||||||| || || |||||||| | || | ||||||||| Sbjct 730871 TCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGT 730825 >seq1 Length=3593316 Score = 159 bits (176), Expect = 5e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || || || ||||| |||||| | || || |||| | Sbjct 1033252 TGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCGG 1033193 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| |||||| || ||||||||| |||||||| ||||| | Sbjct 1033192 ACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAGC 1033133 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| ||||||||| | || ||| |||| || | |||||||||| Sbjct 1033132 AACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAATA 1033073 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||||||||||| || | ||||| ||||| || ||| | || || Sbjct 1033072 TACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGG 1033027 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||||| || || ||||| || ||| | || || |||| | Sbjct 1033480 TGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCGG 1033421 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||||| ||| |||||||||||||||||| ||||| | Sbjct 1033420 ACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAGC 1033361 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| ||||||||||| || ||| | | || || | |||||||||| Sbjct 1033360 AACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAATA 1033301 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | ||||| ||||| || || | || |||| Sbjct 1033300 TTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGGTA 1033253 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||||| || || ||||| || || | || || |||| | Sbjct 1031825 TGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATCGG 1031766 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| ||||| ||| |||||||| |||||||| ||||| | Sbjct 1031765 ATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAGC 1031706 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||||| || ||| | |||| || | |||||||| | Sbjct 1031705 AGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAACA 1031646 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | |||||||||||||| | ||||| ||||| ||| | | || || || |||| Sbjct 1031645 TCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGGAAACTAAA 1031592 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| || || ||||| || || | || || |||| | Sbjct 1032509 TGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCTG 1032450 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| || |||||| || |||||||| || || | Sbjct 1032449 ATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAGC 1032390 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||||||||| ||| | | || ||| | ||||| || | Sbjct 1032389 AACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAACA 1032330 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||| || ||| | ||||| ||||| || || | || |||| Sbjct 1032329 TCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGGTA 1032282 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || |||| || ||||| || ||| | || || || | | Sbjct 1032053 TGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCGG 1031994 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| || || ||| ||| ||||| |||||||| ||||| | Sbjct 1031993 ATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAGC 1031934 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||||| || ||| | || ||| | ||||| |||| Sbjct 1031933 AACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAATA 1031874 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| || | ||||| || Sbjct 1031873 TTCAAAAAGAATCCACCTTACATTTGGT 1031846 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || ||||| ||||| | || || |||| | Sbjct 1032737 TGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCGG 1032678 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| |||||||| |||||||| || || | Sbjct 1032677 ATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAGC 1032618 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || ||||| | || ||| |||| || | ||||| || | Sbjct 1032617 AACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAACA 1032558 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||||||||||||| | ||| | ||||| |||||| | || |||| Sbjct 1032557 TTCAAAAAGAATCGACACTTCATCTCGTATTGCGATTACGTGGTGGTA 1032510 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| ||||| | || || || | | Sbjct 1032281 TGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCTG 1032222 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| || ||||| || ||||| || ||||| | Sbjct 1032221 ATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAGC 1032162 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || || ||||| || ||| ||||| || | ||||| || | Sbjct 1032161 AACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAACA 1032102 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| |||||||| | ||||| || ||||| Sbjct 1032101 TTCAAAAGGAATCGACATTGCATTTGGTTTTACG 1032068 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 |||||| ||||| ||||| ||| | | ||||||||||||||||| || || ||| | | Sbjct 1032865 AGGCATCCCACCAGATCAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCG 1032806 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 || || | ||||| || || ||||||||||| || | ||| | |||||||||||| | Sbjct 1032805 CACCCTATCGGATTACAACATTCAAAAAGAATCTACACTTCATCTCGTATTACGATTACG 1032746 Query 146252 AGGAGGTA 146259 || |||| Sbjct 1032745 TGGTGGTA 1032738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786153408600240