Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 181 8e-41 seq391 147 2e-30 seq558 127 2e-24 seq768 86.0 5e-12 >seq1 Length=3593316 Score = 181 bits (200), Expect = 8e-41 Identities = 173/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCG 29627 ||||||| |||||||| | |||||||||||||| || |||||||||| |||| || || Sbjct 1033036 AAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAAT-GTTCG 1033094 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| ||||||||||| |||||| | ||||||| ||||||||| || |||||||| || Sbjct 1033095 GCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTC 1033154 Query 29688 TTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||| || || | ||| ||| ||| |||| | |||||| || |||| ||||| | ||| Sbjct 1033155 TTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGT 1033214 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||||||||| || ||||| || || || ||||| Sbjct 1033215 AATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 |||| |||||||| | || ||||||||||| ||||||||||| | |||| || ||| Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAAT-GTTCGACC 1031670 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || ||| | ||||| | |||||||| || |||||||| ||||| Sbjct 1031671 ATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTT 1031730 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||||||| |||| | ||| || || |||| ||||| | || || Sbjct 1031731 GTCTTGGATTTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGAT 1031790 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || ||||| || || || |||||| Sbjct 1031791 GGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 154 bits (170), Expect = 1e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCG 29627 || |||| || | |||||| || ||||||||||||||||| ||||||| |||| || || Sbjct 1032521 AATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAAT-GTTCG 1032579 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| || || ||||||||||| | ||||| | |||||| || || ||||| || || Sbjct 1032580 GCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTC 1032639 Query 29688 TTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||||||| | ||| |||||| |||| | || || || |||| ||||| | || Sbjct 1032640 TTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGT 1032699 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || ||||| ||||| |||||||| Sbjct 1032700 AATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||||||| | ||||||||||||||||| || ||||| | | ||| || Sbjct 1031839 ACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCC 1031898 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | ||||||||| || |||||||| || || Sbjct 1031899 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTT 1031958 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| ||| |||| | || || || | || ||||| | ||| | Sbjct 1031959 ATCTTG-AATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGA 1032017 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||||| ||| || || || || ||||| Sbjct 1032018 TCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || ||||| ||||||||||| ||||| | | || | ||| || Sbjct 1032074 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCC 1032133 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || || ||| | ||||||| ||||||||| || ||||| ||||||||||| || Sbjct 1032134 AATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGG 1032193 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||| ||| |||| | || ||||| | || ||||| | || |||||||| Sbjct 1032194 ATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTA 1032253 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| || || || ||||| Sbjct 1032254 CCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || ||||||||||||||||| ||||||| | ||||||| ||| || | || Sbjct 1032763 ATGAAGTGTAGATTCTTTTTGAATGTTGTAATCCGATAGGGTGCGACCATCTTCCAACTG 1032822 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 ||| || ||| | ||||| | ||||||||| || || || || Sbjct 1032823 TTTACCTGCAAAAATCAAACGTTGCTGATCTGGTGGGATGCC 1032864 >seq391 Length=841353 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | || ||||| || || | ||| |||||||| || || || || || | Sbjct 251390 CCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGAC 251449 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | |||||| || | |||||| |||||| | || |||| ||| ||||| |||||| Sbjct 251450 AAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGGA 251509 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || |||||| |||| ||| |||| | ||||||| ||||||| Sbjct 251510 ATTCCTTCCTTATCCTG-AATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTAC 251568 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | ||| |||| || ||||| ||||| |||||||||||||| Sbjct 251569 CTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 140 bits (154), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| ||||| |||| ||||| ||| | || ||||| ||||||||||| ||||| | Sbjct 250933 TCCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGA 250992 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| || || ||||| || ||||| || |||||| | || || | || ||||| |||| Sbjct 250993 CAAT-GTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCG 251051 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| || ||||| || || |||||| | ||| || |||| | || || | ||| Sbjct 251052 GAATCCCTTCTTTATCCTG-AATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCT 251110 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| |||| ||| |||| || || || ||||| ||||| || ||||| Sbjct 251111 ACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| ||||| ||||||| ||||||||||| || ||||| || || | Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || ||||| || |||||| | || | ||||||||||||||| ||| Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| ||||| | || | ||||||| |||| || Sbjct 730946 ATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACC 731005 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || ||||| ||||| || || |||||||| Sbjct 731006 TCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| || || | ||||||||||| || || || || || | | || | |||| Sbjct 251174 CGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCTAGAA 251233 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||| |||||| | || |||| || || || |||||||| || |||||| Sbjct 251234 TCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTCTTTG 251293 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || |||||| | || ||| | || | |||||| |||| ||||| | || ||| Sbjct 251294 TCCTG-AATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGATAT 251352 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||| || |||||||| || ||||| || || || Sbjct 251353 ATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 >seq558 Length=611125 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| ||||| |||| ||||| ||||| |||||||| || ||||| | ||||| Sbjct 303928 CGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCG 303869 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || ||| | ||||| | ||||| ||||||||||| ||||||||| Sbjct 303868 TCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTG 303809 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| | || ||||| || ||||| Sbjct 303808 TCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATG 303749 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || | || || |||||||||||||| Sbjct 303748 TTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 >seq768 Length=1243675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || | ||| || || ||||| ||||| || ||||| | ||||| Sbjct 1130708 CGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCG 1130767 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 ||||| | || || || ||| | |||| | ||||| ||||||||||| ||||| ||| Sbjct 1130768 TCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTG 1130827 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| | || || ||||| || || Sbjct 1130828 TCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATG 1130887 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || | || || || || || ||||| Sbjct 1130888 TTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212993396402