Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq458 140 4e-28 seq456 93.3 5e-14 >seq458 Length=503182 Score = 140 bits (154), Expect = 4e-28 Identities = 187/259 (72%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 171608 TTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 171667 || ||||| | |||||| |||| ||||||||||||||||| ||| ||||| || | || Sbjct 280981 TTGAAGAATTATTATGGTTTATAAAAGGTTCAACTGATTCGAAAAAATTATCCGAAAAAG 280922 Query 171668 GTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTG 171727 |||| ||| ||||| ||| |||||||| |||||| | ||| || |||| || Sbjct 280921 GTGTAAAAATTTGGGATGCAAATGGTTCAAAAGAATTTCTTGATAGTCTTGGTTTTATTG 280862 Query 171728 AAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTC 171787 | | ||||||||||| ||||||| ||||||| ||||||||||||||| || || Sbjct 280861 ATCGTCAAGAAGGTGATCTAGGTCCTGTTTATGGTTTTCAATGGAGACATTTTGGTGCCG 280802 Query 171788 AATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTA 171847 ||||| || | | || ||||| | || ||||| | || ||||||| || || Sbjct 280801 AATATCGTGATAATCAAACTGATTATAATGGTCAAGGTATTGATCAATTAAAACAGCTTA 280742 Query 171848 TTAATACTTTACAAAACAA 171866 | || || | |||||||| Sbjct 280741 TAAAAACAAT-CAAAACAA 280724 >seq456 Length=37656 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 50321 ATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTT 50380 ||||||||| | | |||| ||| | ||||||||| | |||||| |||| || Sbjct 11490 ATGGTGATGTTATTGTATTTAATCGACAACCAACATTACATAAAATGAGTATGATGGGTC 11549 Query 50381 TTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGCAT 50440 |||| || | |||| ||||||| | |||||| || | || | | ||| Sbjct 11550 ATAAAATTCGTGTATTACCATGGTCAACATTTCGTTTTAATTTATCTGTAACAACACCAT 11609 Query 50441 ATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCAT 50491 ||||||||||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 11610 ATAATGCTGATTTTGATGGTGATGAAATGAATTTGCATGTACCACAATCAT 11660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628520813521920