Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq391 197 3e-45 seq1 172 1e-37 seq558 116 7e-21 seq657 100 6e-16 >seq391 Length=841353 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | || || |||||||| | || ||||||||||| ||||| || || | Sbjct 251388 TACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTG 251447 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||| ||||||| ||||||||||||||| |||| || ||||||||| || | Sbjct 251448 ACAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCG 251507 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| ||||| || | ||| ||||||||||| || ||| | ||||||| Sbjct 251508 GAATTCCTTCCTTATCCTGAATTTTCGTTTTCACATTTTCAATTGTGTCAGTGGGTTCTA 251567 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | || | || ||||| || || ||||||||||||||||| Sbjct 251568 CCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCAT 251616 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | || || |||||||| | || ||||||||||| ||||| || || | Sbjct 251160 TACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTG 251219 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||| ||||||| |||||||||||||| |||| || ||||| ||||| | Sbjct 251220 ACAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCG 251279 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || ||||| || |||||| | ||||| || || || ||||| | Sbjct 251280 GAATCCCTTCTTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGA 251339 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||| | || ||||| || ||||||||||| || || || Sbjct 251340 CTTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | ||| || ||||| || | || ||||||||||| || || || || || Sbjct 730825 ACCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGA 730884 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | | ||| |||||||| || |||||||| || |||||||| ||||| || || Sbjct 730885 TAAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGG 730944 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || ||||| || || | ||| | ||||| || ||||| ||||| || Sbjct 730945 AATTCCTTCTTTGTCTTGGATTTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCAC 731004 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||| ||||| || || || || || |||||||| Sbjct 731005 CTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| |||| || | |||| ||| ||||| || || || || ||||| || Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| ||||||||||| |||| | |||||||| || || Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| ||||| || | ||| || ||||||| ||||| || || |||||| Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || | || |||||||| || |||||||| || ||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq1 Length=3593316 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||||| || || || | || |||||||| |||||||||||||| || | ||| Sbjct 1033036 AAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGG 1033095 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| |||||||| ||||||||||| | || ||| |||||||| || || ||||| Sbjct 1033096 CCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCT 1033155 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || || || ||||| |||||||| || || || ||||| ||||||||||| Sbjct 1033156 TTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTA 1033215 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| || ||||| || || ||||| Sbjct 1033216 ATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || || |||| || ||||| || || ||||||||||| | Sbjct 1033253 TACCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGG 1033312 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| | |||||| ||||||||||| | || ||| |||||||| | Sbjct 1033313 ACAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTG 1033372 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| |||||||| || || || ||||| | Sbjct 1033373 GAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGA 1033432 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||||| || || || || ||||| || ||||| || || ||||| ||| Sbjct 1033433 CTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCATGATT 1033485 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || | || |||||||| || ||||| ||||| |||| | | || Sbjct 1031839 ACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCC 1031898 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||| ||||| || || | | ||| |||||||| || || |||||||| Sbjct 1031899 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTT 1031958 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| |||||||||||||| || ||||| || || ||||||||||| || Sbjct 1031959 ATCTTGAATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGAT 1032018 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || || | ||||| || || || ||||| Sbjct 1032019 CGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| | ||| || |||| || ||||| || || || || ||||| | Sbjct 1032054 TACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGG 1032113 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | |||| || ||||| | ||| ||||| |||||||| | || ||| |||||||| | Sbjct 1032114 ACAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGG 1032173 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || || || || || |||||||||||||| ||||||||| || || | Sbjct 1032174 GAATTCCCTCTTTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGA 1032233 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || || | || || || || || ||||| Sbjct 1032234 CTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||| || | || || || |||||||| || || || ||||| | Sbjct 1032510 TACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCG 1032569 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| || ||||| || ||||| ||||| || || | | ||| || ||||| | Sbjct 1032570 ACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTG 1032629 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| || || || || ||||||||||| ||||| ||||| | Sbjct 1032630 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCA 1032689 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || ||||| || || ||||| |||||||| Sbjct 1032690 CTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| || || ||||| ||||||||||| ||||| ||||| ||| Sbjct 1032919 ATACCTTCTTTATCTTGGATTTTGGCTTTCACATTTTCAATTGTATCTGATGGTTCAACT 1032978 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || || || || ||||| || || ||||| || |||||| Sbjct 1032979 TCCAATGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATTTGCATT 1033026 >seq558 Length=611125 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 82580 CCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATC 82639 || ||| || | || ||||| || ||||| | ||| || |||||||| || || || || Sbjct 303944 CCAACCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTC 303885 Query 82640 AGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG 82699 | || | | ||||| || || || || || |||||||| | | || || || || Sbjct 303884 CGCGAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGG 303825 Query 82700 AGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTC 82759 || || || || || || || ||||| ||||| || | || ||||| || || || || Sbjct 303824 CGGAATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTC 303765 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||| | ||||| ||||||| || | ||||| |||||||||||||| || Sbjct 303764 CACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCATCAT 303711 >seq657 Length=2482312 Score = 100 bits (110), Expect = 6e-16 Identities = 237/354 (67%), Gaps = 3/354 (1%) Strand=Plus/Plus Query 143935 TTCCTATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCT 143994 |||| |||| | |||| |||||| ||| | | |||| | |||| ||||| || Sbjct 292211 TTCC-ATTTTTCGAGATGCAGATGAATGGTCAAAATGGAGACAAATGGGTGATCCTGTAC 292269 Query 143995 TGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATA 144054 | ||||| ||| | || | ||||| ||| || | || ||||| || ||||| | Sbjct 292270 TTCATATTGAATTAAGAAATTGGGCCGATATTGGCGTGATTGCGCCATTGGATGCAAACA 292329 Query 144055 CGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCT 144114 | | | ||||||| | || ||||| || |||||||| | | |||| || | || | Sbjct 292330 CAATGGGAAAAATATCTAACGGTATTTGTGATAATTTGGCTTCTTGTATAATACGCGCTT 292389 Query 144115 GGGATATAAATAAACCTCTTATTTTTTGCCCCG-CTATGAATACCCTTATGTGGGAACAT 144173 ||||||| ||||||| || || ||||| ||| ||||||| ||||||| | ||| Sbjct 292390 GGGATATGAATAAACAGCTG-TTATTTGCACCGGCTATGAACGTTTATATGTGGAATCAT 292448 Query 144174 CCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCATAGAAATAGAATGT 144233 || || || |||||| || | ||||||| | | || | || |||| | | Sbjct 292449 CCGATAACGGAAAAATGCATTAAAGTTTTAAAAGAATTAGGCTATATTCAAATTGGACCG 292508 Query 144234 ATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGTT 144287 || || || ||||||||||| || |||| || || |||||||||||| Sbjct 292509 ATTTCTAAGAAGCTAGCCTGTGGTGATTATGGAATGGGAGCCATGGCAGAAGTT 292562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981810569688158