Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq657 102 1e-16 >seq657 Length=2482312 Score = 102 bits (112), Expect = 1e-16 Identities = 235/353 (67%), Gaps = 1/353 (0%) Strand=Plus/Plus Query 142954 TTCCTATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCT 143013 |||| |||| | |||| |||||| ||| | | |||| | |||| ||||| || Sbjct 292211 TTCC-ATTTTTCGAGATGCAGATGAATGGTCAAAATGGAGACAAATGGGTGATCCTGTAC 292269 Query 143014 TGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATA 143073 | ||||| ||| | || | ||||| ||| || | || ||||| || ||||| | Sbjct 292270 TTCATATTGAATTAAGAAATTGGGCCGATATTGGCGTGATTGCGCCATTGGATGCAAACA 292329 Query 143074 CGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCT 143133 | | | ||||||| | |||||||| || |||||||| | | |||| || | || | Sbjct 292330 CAATGGGAAAAATATCTAACGGTATTTGTGATAATTTGGCTTCTTGTATAATACGCGCTT 292389 Query 143134 GGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATC 143193 ||||||| ||||||| || | ||| || |||||||| ||||||| | |||| Sbjct 292390 GGGATATGAATAAACAGCTGTTATTTGCACCGGCTATGAACGTTTATATGTGGAATCATC 292449 Query 143194 CTATTACAGAAAAACATATAGATGCTTTAAAACATATGGGTTTCATAGAAATAGAATGCA 143253 | || || |||||| || | | ||||||| | | || | || |||| | | | Sbjct 292450 CGATAACGGAAAAATGCATTAAAGTTTTAAAAGAATTAGGCTATATTCAAATTGGACCGA 292509 Query 143254 TAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTT 143306 | || || |||||||| || || |||| || || |||||||||||| Sbjct 292510 TTTCTAAGAAGCTAGCCTGTGGTGATTATGGAATGGGAGCCATGGCAGAAGTT 292562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903396271129920