Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq335 215 5e-51 seq558 114 1e-20 seq768 105 6e-18 seq1 98.7 1e-15 seq391 86.0 6e-12 >seq335 Length=939964 Score = 215 bits (238), Expect = 5e-51 Identities = 844/1300 (65%), Gaps = 89/1300 (7%) Strand=Plus/Minus Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGAT-CGGGAATGCCGTCGATGC 148170 ||| |||||||||| ||||||| ||||| ||| | | | ||||| | || ||||| Sbjct 180303 CTTGATCTCCCAGGTCGTCTTGAACAGCGCCTTCAGCGGCTGCGGGATTTCC-TCGATCA 180245 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 |||||||||||||| |||||| | | ||| | || | |||| | || || Sbjct 180244 GCTGCACCGAGCCGTTGTGCGCGATGAGCTGCTGCTTCAGCGCCTCCGACCACAGCCCGA 180185 Query 148231 GCT-CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 ||| ||| | | | | || | || || | ||| ||||||||| ||||||| Sbjct 180184 GCTTCGAGAGCGCGAGC-ACCAAGTGCTTGTTGAGCACGCAGAACTCGCCGCTGAGCACG 180126 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | ||||||| ||| |||| || ||||||||| ||| || | |||||| Sbjct 180125 CGGCGCGTAAACACGTTCGACGTGTACGGCTCGAACGACTCGCAGTTCCCGAGGATCTGC 180066 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | |||| ||||| ||||| ||| |||||||| |||||||| ||| || Sbjct 180065 GAAGTCGACGCCGTCGGCATCGGCGCGACCAGCAGGCTGTTGCGCAGCCCGTACTTGACC 180006 Query 148410 ATT---TTGCGCTTCAGAGCCGCCCAGTCCCA---------GAGCGG------------- 148444 || | |||| || || |||||||||| |||| | Sbjct 180005 ATCGCCTCGCGC---AGCTCCTCCCAGTCCCACATGCCCGAGAGCTGAATCTCACGCAAG 179949 Query 148445 ---------CGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGG 148495 || || | | ||||||||| |||| |||| | |||| ||| ||||| Sbjct 179948 TTCCGCTCGCGCCGTTCTT-CGTTCCACAAGTCGAACTGGAATTTGCCTTCGCTCGCGGG 179890 Query 148496 GCTGCCCTCGTA-CGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGA 148554 ||| ||| | | || |||||| |||||| || ||| || ||| |||||| | Sbjct 179889 CGAGCCTTCGAAGCTCGC-GTACGGCCCGTGCTCCTTCGCGAGCTCGACGCTCGCGGTCA 179831 Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC-CGCCGACTCGCTT 148613 ||||||| |||| ||||||||| || | | |||| | | || |||| ||| Sbjct 179830 CCGCGCCGAAGTAGATCGTCTCGAAGATGTTCTTGTTCA-CTTCGTTCGCCTCGGGGCTG 179772 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| |||||| |||||| || | |||||| || | ||| || ||||| | ||| || Sbjct 179771 TCGAACGGCAGCCGCAGCAGCTGCAGCGCGTCCGCGAAGCCTTGCACGCCGATGCCGATC 179712 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATG 148733 |||||||| | |||| | | ||||| ||||| | ||| | |||||| Sbjct 179711 GGCCGGTGCCGCAGGTTGCTGCGCCGCGCCTTCTCGGTCACGTAGAAGCCCACGTCGATC 179652 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC 148793 | |||| || || || ||| | ||| | | | |||| ||| ||||| Sbjct 179651 ACGTTGTTCAGGTTCTGCGTCACGATCTTCGCGACCTCGAACAGC--TTC----TCGTAG 179598 Query 148794 TTGTCATCTACGATGCATCG--GTTCACG----------GCGATAGAG--GCTAGATTGC 148839 ||| | | || | | ||| || |||| |||| || | || || |||| Sbjct 179597 TTGA-AGCGCCGCTTC-TCGACGTCCACGTACGCGGGCAGCGACAGCGACGCGAGGTTGC 179540 Query 148840 ACACGGCCGTCTCATC-CGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 |||| || |||| || || | || |||||| || | || | |||||| || | | Sbjct 179539 ACACCGCGATCTCCTCGCGCGACG-TGTACTGCACCACTTCCGTGCACAGGTTCGAGGAC 179481 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 | ||| ||| | |||| || || ||||| |||||||||||||||||||| || | Sbjct 179480 TGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTACACCAAG 179421 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGC-- 149016 ||||| ||| || || | |||||| | ||| ||| |||| | ||| | |||||| Sbjct 179420 TACGGATTGCCCGTCTCGATCTGCGTGTTCACAATG-ACCG-TCCAGAGCGCGCGCGCCT 179363 Query 149017 GCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCT 149076 ||| ||| || || |||| ||| |||||| || |||||| |||||| || Sbjct 179362 TCACCTGCCGCACGAAGCGCTGCTCGGCCTCGTAGCGCGTGTACAGCGCGTCGAACTCCG 179303 Query 149077 CGCCGTAGCAATCG-TCGAGACCGGGGCACTTGTGCGGG-CACATGAGCGACCACACGCC 149134 |||| || ||| | || |||| | || || ||||| ||||| || ||||||||| Sbjct 179302 CGCCCCAGACTTCGAACAAGCCCGGCG-AC-TGCGCGGGACACATCAGACTCCACACGCC 179245 Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCG 149194 ||| ||| |||||| ||| |||| ||| | | ||| | | |||||| || Sbjct 179244 GTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTACAGCCCCAGGAAGAGGTCCCG 179185 Query 149195 CGCCTTGC---AGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGT 149250 || ||| | |||||| ||| |||||| ||||| | || | || | ||| |||| Sbjct 179184 CG---TGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTCGATGAACTC-GAAGATGT 179129 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGT 149307 | |||||||||||||| | ||| | ||||| |||| |||||||| ||||||||||| Sbjct 179128 CTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCGCTTGCCGCCGCCCTGGT 179069 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| |||| | | ||| ||||| || | ||| || Sbjct 179068 CGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGG 179029 >seq558 Length=611125 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || || |||||||||||||| || ||||| || | | |||| ||| |||||| Sbjct 303919 AAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCGAGC 303860 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| ||||| | || | ||||||||||| || || ||||| || ||||| |||| Sbjct 303859 TGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGGATC 303800 Query 133575 TTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| ||| ||| | ||||||| | || ||||| |||| || | | | ||||| Sbjct 303799 TTAGCTTTGACGCT-CTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTGCC 303741 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 303740 CGTGAGTGTCTTGACAAATATCTGCAT 303714 >seq768 Length=1243675 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || || || ||||| || || || ||||| || | | |||| | ||| || | | Sbjct 1130717 AAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATCCAAC 1130776 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| || ||||||||||| || || ||||| |||||||| |||| Sbjct 1130777 TGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATC 1130836 Query 133575 TTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| ||| ||| | ||||||| | || ||||| || | ||||| | | || || Sbjct 1130837 TTAGCTTTGACGCT-CTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTTCCC 1130895 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 1130896 CGTGAGCGTCTTCACGAAGATTTGCAT 1130922 >seq1 Length=3593316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 || || ||||| || || |||||||| | | || | | | | || || ||||| ||||| Sbjct 1032542 GTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCA-TCTTCAAGCTGTTTGCC 1032600 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | || |||||||| || || || ||||| ||||| ||| || ||| Sbjct 1032601 AGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTT 1032660 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | ||| ||||| || | || | |||||| || |||| ||| Sbjct 1032661 GACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGT 1032720 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||||||||| Sbjct 1032721 TTTGACAAAAATCTGCAT 1032738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || || ||||| || || || |||||| || || ||| | || || | Sbjct 1031621 AAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCA-TCTTCCAA 1031679 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | |||||||| || || || || ||||| ||||| ||| Sbjct 1031680 TTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGAT 1031739 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| || | || | || || | || ||||| || | ||||| |||||| | Sbjct 1031740 -TTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATGGTTTTAC 1031798 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| |||||||||||||| ||||| Sbjct 1031799 CGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAG 133513 ||||||| |||||| ||||| |||||||| ||||| | | || | | | | || ||||| Sbjct 1033048 AAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCA-TCTTCGAG 1033106 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || | || ||||| || || || || ||||| || || ||| Sbjct 1033107 TTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTATCCTGGAT 1033166 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | || | ||||| | || || || || | || | |||||||| Sbjct 1033167 -TTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATGGTTTTGC 1033225 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||||||||||||| ||||| Sbjct 1033226 CAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 >seq391 Length=841353 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| || ||||| |||||||| || ||||| ||| | ||| ||| || || Sbjct 730847 AAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTTGTCGTCTAGT 730906 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| || | ||||| || || || || ||||| ||||| ||| Sbjct 730907 TGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGGAT- 730965 Query 133575 TTTTGCTTGAGCTG--CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| || | || ||||| ||||| | || ||||| || | ||| | | | || | Sbjct 730966 -TTTGGTTTTGATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAATGTTCTTCC 731024 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | ||||| |||||||||||||| Sbjct 731025 CTGTTAATGTTTTCACGAAAATCTGCAT 731052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412811471280