Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 152 3e-32 seq391 123 2e-23 seq768 95.1 8e-15 >seq1 Length=3593316 Score = 152 bits (168), Expect = 3e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || |||||||||| || |||||||| ||||| |||||||| | ||| || | Sbjct 1031612 CGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCA 1031671 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||||||||||||||| |||||||||||||||||| | || | |||||||||| Sbjct 1031672 TCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTG 1031731 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||||| || || |||| || | || || || |||||| || | ||||| Sbjct 1031732 TCTTGGATTTT-TGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGAT 1031790 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| || || |||||||| || || ||||| Sbjct 1031791 GGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| | ||| ||||||||| ||||||||||| || Sbjct 1032283 ACCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGA 1032342 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || |||||||| |||||||| |||||||| ||||| ||| | || Sbjct 1032343 TAATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 1032402 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || |||||| || | |||| || | || || || ||| | Sbjct 1032403 AATTCCCTCTTTATCCTGAATTTT-TGCCTTCACATTTTCGATTGTATCAGATGGTTCAA 1032461 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| | ||||| |||||||| || || ||||| || || || |||||| Sbjct 1032462 CGTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATA 1032511 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| | || || ||||| || || |||||||| | || || | Sbjct 1033266 ACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACC 1033325 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| || ||||| ||||| || ||||||||| | || | |||||||| Sbjct 1033326 ATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTT 1033385 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || |||||| | || ||||| || | |||||| || ||| || || | |||| Sbjct 1033386 ATCTTGAATTTT-GGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGA 1033444 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| || || |||||||| ||||| ||||| Sbjct 1033445 TGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| || |||||||||| ||| ||||||||||| || ||||| || Sbjct 1033027 CCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGAC 1033086 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || | |||||| || ||||| ||||| || ||||||||| | || Sbjct 1033087 AATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033146 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || ||||| |||| |||| || | ||||| || ||| || Sbjct 1033147 ATACCTTCTTTATCCTGGATTTTAGCTTTC-ACATTTTCGATAGTGTCCGATGGTTCGAC 1033205 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || || |||||||| || || |||||| Sbjct 1033206 TTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCATA 1033254 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||||| ||| |||||||| || ||||||||||| Sbjct 1031828 CCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGAT 1031887 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||||||||| || || ||||||||||| ||||||||| | || Sbjct 1031888 AAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGA 1031947 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || ||| || | || |||| || | || || || || || Sbjct 1031948 ATACCTTCCTTATCTTGAATCTT-GGCTTTTACATTTTCGATTGTATCCGATGGCTCGAC 1032006 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||||||||| |||| || || || || || |||||| Sbjct 1032007 TTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCATA 1032055 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||| |||||||| | || || ||||| |||||||||||||| Sbjct 1032055 ACCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGA 1032114 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || |||||||| ||||||||||| ||||| || ||||||||| | || Sbjct 1032115 CAAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGG 1032174 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| | || |||| || | || || || || | Sbjct 1032175 AATTCCCTCTTTGTCCTGGATTTT-GGCTTTTACATTTTCGATCGTATCAGATGGCTCGA 1032233 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || | ||||| || || || |||||| Sbjct 1032234 CTTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCATA 1032283 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || || || | ||| || || |||||||| ||||||||||| || Sbjct 1032511 ACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGA 1032570 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || | ||||| || || ||||||||||| ||||| ||| | || Sbjct 1032571 CAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGG 1032630 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | | |||| || | ||| || | ||||| Sbjct 1032631 AATTCCTTCTTTGTCTTGGATTTT-AGCCTTGACATTTTCAATGGTATCCGAGGGTTCCA 1032689 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || || ||||| ||||| ||||||||| Sbjct 1032690 CTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCATA 1032739 Score = 95.1 bits (104), Expect = 8e-15 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| || | ||| || || |||||||| ||||||||||| || Sbjct 1032739 ACCACCACGTAATCGTAATACGAGATGAAGTGTAGATTCTTTTTGAATGTTGTAATCCGA 1032798 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 || ||||| | || ||||| ||||| || |||||||||||||| ||||||||| Sbjct 1032799 TAGGGTGCGACCATCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGATCT 1032853 >seq391 Length=841353 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || ||||||| ||| | ||| || ||||| ||||||||||| || Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || ||||| | ||| ||||| |||||||| || ||||| ||||| |||| Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGA 251053 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | |||||||| || ||||||| ||||| | | ||| ||| ||| || || Sbjct 251054 ATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACT 251113 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | | || |||| ||||| || ||||||||||| || |||||| Sbjct 251114 TCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCATA 251161 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | |||| ||| || |||| || ||||| || || ||||| || || Sbjct 251389 ACCTCCTCTAAGCCGTAGCACTAAGTGTAACGTCGATTCTTTCTGGATATTGTAGTCTGA 251448 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | || || ||||||||||| |||||||| || || || ||||| |||| Sbjct 251449 CAAAGTTCTAGAATCTTCTAATTGTTTTCCAGCAAAAATTAATCGTTGTTGATCAGGCGG 251508 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||||| |||| |||| || | ||||| | | ||| | Sbjct 251509 AATTCCTTCCTTATCCTGAATTTTC-GTTTTCACATTTTCAATTGTGTCAGTGGGTTCTA 251567 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||||||||||| ||||||||||| ||||||||| Sbjct 251568 CCTCAAGCGAAATATTTTTACCTGTTAATGTTTTTACAAATATCTGCATA 251617 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33518 CGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAAT 33577 || |||| ||||| | ||| | ||| ||||| | ||| ||||| || |||||||| | Sbjct 730821 CGCCACCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGT 730880 Query 33578 CGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTT 33637 |||| | ||||| | |||||| | ||| || || |||||||| | | |||||||| Sbjct 730881 CGGATAAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCG 730940 Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT 33696 | || | ||||||||||| ||||| |||| | | || | ||||| ||| | Sbjct 730941 GGGGAATTCCTTCTTTGTCTTGGATTTT-GGTTTTGATGGACTCAATAGTGTCATTTGGT 730999 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | || || | || |||||||| ||||| || || |||||||| Sbjct 731000 TCCACCTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | || | ||| || |||| ||| ||||| || || ||||| || || Sbjct 251161 ACCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGA 251220 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | || || || |||||||| |||||||| || ||||| || ||| |||| Sbjct 251221 CAAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGG 251280 Query 33642 CACACCTTCTTTGTCGGCAATTTTC-TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||||||||||| ||||||| | ||| ||| || | |||||| | | ||| Sbjct 251281 AATCCCTTCTTTGTCCTGAATTTTCATCTTT--ACACTCTCAATAGTGTCGTTGGGTTCG 251338 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | | || |||| |||||||| || |||||||| || || ||| Sbjct 251339 ACTTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTATA 251389 >seq768 Length=1243675 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || | || ||| ||||| |||||||| || | ||| ||||| |||| || Sbjct 1130713 CACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATC 1130772 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| || || ||||||||||||| ||||||||| || |||| | || || ||||| Sbjct 1130773 CAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTG 1130832 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| | | | |||||| ||| ||||| |||| ||||| | || Sbjct 1130833 GATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTT 1130892 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| || || ||||| ||||| Sbjct 1130893 CCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698703962240