Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 >seq1 Length=3593316 Score = 118 bits (130), Expect = 3e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || ||||| || || |||||||| || ||||| || ||||| Sbjct 1032268 CAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCTGATACGATCGAAAA 1032209 Query 206244 AGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||||| || ||| || || || ||||| |||||| || || ||| || | |||| Sbjct 1032208 TGTAAAAGCCAAA-ATCCAGGACAAAGAGGGAATTCCCCCAGATCAGCAACGATTGATCT 1032150 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | ||||||||||| |||||||||||||| |||||| ||||||||||| | || || || | Sbjct 1032149 TTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAACATTCAAAAGGAAT 1032090 Query 206363 CTAC 206366 | || Sbjct 1032089 CGAC 1032086 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| || || || ||||| Sbjct 1031811 AAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATCGGATACTATCGAAAAT 1031752 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || ||||| |||||||| ||| || || || | | ||||| Sbjct 1031751 GTCAAAGCAAAA-ATCCAAGACAAAGAAGGTATTCCACCAGATCAGCAGCGTTTGATCTT 1031693 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| || ||||||||||| | || ||| ||||||| ||| |||| ||||| || Sbjct 1031692 TGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAACATCCAAAAAGAATC 1031633 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || | || ||| ||||||| Sbjct 1031632 GACATTACATTTGGTATTGCGACTTCG 1031606 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| || || |||||||||||| || || Sbjct 1032735 CAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCGGAT 1032676 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || || ||||| |||||||||||| || ||| ||| Sbjct 1032675 ACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAGCAA 1032616 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || || ||| | |||||||| | || ||| | ||||||||| | Sbjct 1032615 CGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAACATT 1032556 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || || ||||| || || ||| || Sbjct 1032555 CAAAAAGAATCGACACTTCATCTCGTATTGCGA 1032523 Score = 102 bits (112), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||||||||||| ||| || ||||| ||||| Sbjct 1033466 AAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCGGACACCATCGAAAAT 1033407 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| ||| || || ||| || | ||||| Sbjct 1033406 GTTAAAGCCAAA-ATTCAAGATAAAGAAGGCATTCCACCAGATCAGCAACGATTGATCTT 1033348 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 1033347 TGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAATATTCAAAAGGAATC 1033288 Query 206364 TAC 206366 || Sbjct 1033287 AAC 1033285 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || |||||||||||||||||||| || || || ||| ||||| Sbjct 1032040 CAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCGGATACAATCGAAAA 1031981 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||||||||||| || ||||| ||| || || ||| | | || || Sbjct 1031980 TGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAGCAACGTTTGATTTT 1031921 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | || || |||||||||| | || ||||| || Sbjct 1031920 CGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAATATTCAAAAAGAATC 1031861 Query 206364 TAC 206366 || Sbjct 1031860 CAC 1031858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181800782171562