Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq391 125 7e-24 seq335 111 1e-19 >seq1 Length=3593316 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || ||||| |||||||||| | | || |||||||| || || || || || || Sbjct 1033032 ACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGT 1033091 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||| |||||||| | | |||| | || || |||||||| || || || Sbjct 1033092 TCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACC 1033151 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||||| ||||| | ||| | ||| || | || || ||||| | Sbjct 1033152 TTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCGACTTCCAA 1033211 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| |||||||| |||||| ||||| Sbjct 1033212 AGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGTACGCGA 131967 ||||| |||||||| | ||||||||||||| |||||||| | || | || ||||| Sbjct 1032296 CGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAAT-GTACGACC 1032354 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| | |||||||||| | |||| | ||| || || ||||| || || || ||||| Sbjct 1032355 ATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTT 1032414 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||||||| |||| | ||| | ||||| | || || || || | || | Sbjct 1032415 ATCCTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGAT 1032474 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | |||||| ||||| Sbjct 1032475 GGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 123 bits (136), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| || |||||||| || || ||| || ||||| | Sbjct 1033267 CGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCA 1033326 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | |||| | || || |||||||| || |||||||||||| Sbjct 1033327 TCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTA 1033386 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | || || ||||| | || | Sbjct 1033387 TCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATG 1033446 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGATT 132136 ||||||||||||| ||||||| ||| || ||||||| | ||| |||| Sbjct 1033447 GTTTTACCAGTCAATGTTTTTACGAAGATTTGCATGATTGATT-GATT 1033493 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | | || ||||||||||| ||||| ||| | |||||| |||||| Sbjct 1031846 ACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCC 1031905 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||| | | || | ||| || |||||||| || || ||||| ||||| | Sbjct 1031906 AATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGA 1031965 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | ||| | ||||| | ||||| ||||| | || | ||||||| Sbjct 1031966 ATCTTGGCTTTTACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTTA 1032025 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | |||||| ||||| Sbjct 1032026 CCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || ||||| || | ||| | | || ||||||||||||||||| || || || Sbjct 1032517 ACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGT 1032576 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| |||||||| || | | || | ||| || || ||||| || || || Sbjct 1032577 TCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCC 1032636 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||||| || | | ||| | ||||| | || |||||||| | Sbjct 1032637 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAA 1032696 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||||| |||||| | ||||||||||| Sbjct 1032697 TGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||||||||| | | || || |||||||||||||| ||| || || | | Sbjct 1032068 CGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCA 1032127 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| | |||| | || || |||||||| || || || ||||| Sbjct 1032128 TCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTG 1032187 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||||| | ||||| ||||| | || | Sbjct 1032188 TCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATA 1032247 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | |||||| ||||| Sbjct 1032248 GTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 >seq391 Length=841353 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| |||| ||| | |||| || |||||||||||||| || || || || Sbjct 250942 CAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGACAATGTCCG 251001 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| || || || || || | | | |||| ||||||||||| || || || ||||| Sbjct 251002 CGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTC 251061 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| |||||| ||||| ||| | |||||| | ||||| ||||||| | Sbjct 251062 TTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGA 251121 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | |||| || |||| |||||||| ||||| ||||| Sbjct 251122 AATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq335 Length=939964 Score = 111 bits (122), Expect = 1e-19 Identities = 348/528 (66%), Gaps = 11/528 (2%) Strand=Plus/Minus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCG-GCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||||| || ||||| || || |||| ||| ||| || |||||||||| | ||| | ||| Sbjct 179552 GACGCGAGGTTGCACACCGCGATCTCCTCGCGCGACG-TGTACTGCACCACTTCCGTGCA 179494 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 |||||| | | | ||| || | || |||| || || || ||||||||||| Sbjct 179493 CAGGTTCGAGGACTGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGCACGCGTC 179434 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAG 147644 ||| | | || |||||| ||| ||||||| ||||| | || || | | | || Sbjct 179433 CTTGTACACCAAGTACGGATTGCCCGTCTCGATCTGCGTGTTCACAATGACCGTCCAGAG 179374 Query 147645 GTCCTGCGCTCGCACCCGCTGC-CGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACC 147703 | |||| |||| || || ||| |||| |||| ||||| ||| ||||| | Sbjct 179373 CGCGCGCGCCTTCACCTGCCGCACGA-AGCGCTGCTCGGCCTCGTAGCGCGTGTACAGCG 179315 Query 147704 GCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCG 147763 || ||||| |||| || ||| | ||| || |||| ||||||||||| Sbjct 179314 CGTCGAACTCCGCGCCCCAGACTTCGAACAAGCCCGGCGACTGCGCGGGACACATCAGAC 179255 Query 147764 ACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACA 147823 ||||| | |||| ||| ||||| ||||| |||| || | ||||| | | Sbjct 179254 TCCACACGCCGTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTACAGCCCCAGGA 179195 Query 147824 TAAGATCGCGCGCTTTGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCT 147881 || || |||| | |||| || ||| ||| |||||| || | | | || | Sbjct 179194 AGAGGTCCCGCG-TGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTCGATGAACTCG 179136 Query 147882 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCC 147938 | ||||||| |||||||| || || | ||||| || | | ||||| ||||| || Sbjct 179135 A-AGATGTCTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCGCTTGCCGCC 179077 Query 147939 GCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 |||||||||||| | |||| | | ||| |||||||||| ||| || Sbjct 179076 GCCCTGGTCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGG 179029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603323999920