Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq391 111 1e-19 >seq1 Length=3593316 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || |||| || ||| ||||||| | |||||||| |||| | Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGA-GCCATC 1031996 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||| ||||| | |||||| || ||| ||||| || ||||| || || ||||| Sbjct 1031995 GGATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCA 1031936 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| || || |||||| | ||||||| | | | ||||||||| Sbjct 1031935 GCAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAA 1031876 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||||||||||| | ||||| ||| Sbjct 1031875 TATTCAAAAAGAATCCACCTTACATTTGGTG 1031845 Score = 123 bits (136), Expect = 2e-23 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| || || || ||| | || || | ||||||||| ||| | Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAA-CCATC 1033195 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | |||||||| | || ||| ||||| |||||||| ||||| || || ||||| Sbjct 1033194 GGACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCA 1033135 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| || | || | | || |||||||||||||||| ||| |||| | |||| Sbjct 1033134 GCAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGG--ATTAT 1033077 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| ||||||||||||||| | ||||| || || Sbjct 1033076 AATATACAAAAAGAATCCACCTTACATTTGGTATT 1033042 Score = 123 bits (136), Expect = 2e-23 Identities = 166/227 (73%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 25162 TCAATTAAACAA-CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCG 25220 ||||| || ||| ||||||| | || ||||||||||| || || ||| | ||||| | | Sbjct 1033495 TCAATCAATCAATCATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGG 1033436 Query 25221 AAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGT 25279 |||||||| ||| || | || ||||| | || ||| |||||| |||||||| || Sbjct 1033435 AAGTCGAA-CCATCGGACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGC 1033377 Query 25280 ATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT 25339 || || || ||||||||| || | || | | || |||||| | ||||||| | | | | Sbjct 1033376 ATTCCACCAGATCAGCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACT 1033317 Query 25340 GTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 | |||||| ||||||||||| ||||| || | ||||| || || Sbjct 1033316 TTGTCCGATTATAATATTCAAAAGGAATCAACATTGCATTTGGTATT 1033270 Score = 120 bits (132), Expect = 3e-22 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||| ||||| ||| | ||||| | ||||| ||| ||| | Sbjct 1031826 ATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAA-CCATC 1031768 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||||||||| | || ||| |||||| || ||||| ||||| || || ||||| Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | | || | | ||| |||||| | ||||||| | ||| |||| |||||| Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTC--CGATTAT 1031650 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || || ||||||||||| || | ||||| || || || | | || ||||| Sbjct 1031649 AACATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGGAAA 1031597 Score = 104 bits (114), Expect = 2e-17 Identities = 321/488 (66%), Gaps = 24/488 (5%) Strand=Plus/Minus Query 110036 TATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATA 110095 |||||| | ||||||||||| |||||||| | ||| || || | ||||| | | |||| Sbjct 930111 TATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAATGATATTTGTTCCATA 930052 Query 110096 AACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGA 110155 || || || ||||| || ||| | ||||| || | | ||||| | | || ||| Sbjct 930051 AAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAATTCAACCAATAAACGA 929992 Query 110156 TCCGCCACAA-ATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAAC 110214 | || ||||| |||||||||| ||| |||| | | | ||||| || | || | || Sbjct 929991 T-CGGCACAATATTCAATATAATCGGACATTAATTTAGCATTCATACCGATCAATGATAC 929933 Query 110215 TGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGAACATACTCAA 110274 ||||| || |||| ||| || | |||||| | ||||| || | || | |||| Sbjct 929932 TGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCATC-AATAATAATTTCAA 929874 Query 110275 CACCTGGCTCTTATGAAGCTTGTTCTTTTCGGGAATATATCTATTATAGTAGAGGCAGGC 110334 || | | | | |||| || | || |||||| || | | | || ||||| Sbjct 929873 CAATTCGTTGTGATGA----TGGACGATT-ACGAATAT---GATGAAACAAAAGACAGGC 929822 Query 110335 AAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACCGGG 110394 ||||||| |||||||||||||| | ||||| | ||| || | || | ||| || Sbjct 929821 AAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGTAAGACCAGG 929762 Query 110395 ---TAGAGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCGG--AAA 110449 ||| ||| | ||| ||||| | | ||||| ||||| |||| ||| Sbjct 929761 CATTAG-GCCACGTTT-------TTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAAA 929710 Query 110450 AATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTATTT 110509 |||| |||||| || ||||| || | | || |||||||||||| | || | || | Sbjct 929709 AATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATCT 929650 Query 110510 TCTATCCA 110517 | | |||| Sbjct 929649 TGTGTCCA 929642 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||| || || ||| | ||||| | || || ||| ||| | Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAA-CCATC 1032452 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || ||||||| ||||||||||| || || || || || Sbjct 1032451 TGATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCA 1032392 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | | ||| |||||| | ||||||| | | | | |||||||| Sbjct 1032391 GCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAA 1032332 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || |||||||| || || | ||||| || || Sbjct 1032331 CATCCAAAAAGAGTCAACTTTGCATTTGGTATT 1032299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || ||| | || || | ||||| ||| || Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| || ||||| || || || || || ||| Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | |||| || |||||||| || ||||||| ||| |||| | |||||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGG--ATTACA 1032561 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 | |||||||||||||| || ||||| | || || |||| Sbjct 1032560 ACATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATT 1032521 >seq391 Length=841353 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 || ||| | |||||||| || ||||| |||||| || | | ||||||||| ||||| Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| ||| ||||| |||||| || ||||| || || ||||| || || Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 || || | |||| | || ||||| | |||||| ||||| | ||||| | |||| Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAG--ACTACA 251211 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || ||||||||||| | || |||||| | || | ||||| || Sbjct 251210 ATATCCAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGG 251162 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||||||||| || ||| || || | || || ||| ||| Sbjct 251616 ATGCAGATATTTGTAAAAACATTAACAGGTAAAAATATTTCGCTTGAGGTAGAACCCACT 251557 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| ||||| || || || ||||| ||||| Sbjct 251556 GACACAATTGAAAATGTGAAAACGAAAATTCAGGATAAGGAAGGAATTCCGCCTGATCAA 251497 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 ||| || | |||| | || |||||| | |||||| ||||| ||||| || |||| Sbjct 251496 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGATTCTAGAACTTTGTCA--GACTACA 251439 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| || |||||||| || | || |||||| || | | |||||||| Sbjct 251438 ATATCCAGAAAGAATCGACGTTACACTTAGTGCTACGGCTTAGAGGAGG 251390 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| || || |||||| || | ||||||| || | ||| Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || || ||| |||||| |||||||| || || ||||| ||||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT--GATAGAAATGTCAGCGATTACA 25352 || | | |||| | || || ||||| || ||| | | ||||| ||||||| Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCA--GATTACA 250983 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 | |||||||| ||||| || | ||| | ||||| | |||||||||||| Sbjct 250982 ACATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGGA 250933 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||||||||| || || || || | || || ||| | || Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 25235 GATACTATCGAG-CAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | | ||||| |||| | || ||||| || || || || ||||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAA-GACAAAGAAGGAATTCCCCCGGATCA 730934 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| |||| | || || ||||| || || | | | | | ||| ||||| Sbjct 730933 GCAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAA 730874 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||||||||| |||||||||||| | | | |||||||| Sbjct 730873 CATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGG 730826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445087044815040