Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq335 268 1e-65 seq768 111 2e-18 >seq335 Length=939964 Score = 268 bits (296), Expect = 1e-65 Identities = 377/519 (73%), Gaps = 19/519 (4%) Strand=Plus/Plus Query 1455801 GAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG 1455860 || ||||||||||||||||||||||| | ||||| |||||| || | |||||| Sbjct 899777 GAAGCCTCCTTTTGGACCGCCGAGGAAATTGACCTGTCTGCCGACTTGGACGACTGGGAC 899836 Query 1455861 TCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAG 1455920 |||||| |||| ||||| || |||||||||||||| ||||| ||||| ||| || || Sbjct 899837 GCGCTGAAGGACGGTGAGCGGCACTTCATCAAGCACGTGCTCGCGTTTTT-CGCGGCGAG 899895 Query 1455921 CGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGA 1455980 ||| ||||||||| |||||| || ||| |||||||| || || | || |||| | Sbjct 899896 CGACGGCATCGTGCTCGAGAATCTCGCCAGCCGCTTTTTGGTCGAAATGCAGCTGCCCGC 899955 Query 1455981 GGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTC 1456040 | || |||||||| ||||||| | || || |||||||||||||| || || ||| Sbjct 899956 TGTCCGCGAGTTTTACGCGTTCCAGGTTGCGATGGAAAACATCCACTCGGAGACGTACAG 900015 Query 1456041 GCTCCTGATCGACACCTACGTC---AAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGC 1456097 | ||||||||||||||| || || | | | ||| ||| | | | ||||| Sbjct 900016 CTTGCTGATCGACACCTACCTCGCGCAGCAGGCCGACGAAAAGCTGCGGTTGCTGCGCGC 900075 Query 1456098 CATCGA-CACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACA 1456156 ||||| ||| |||||| |||| | ||||| || |||||| | ||||||||| ||| Sbjct 900076 AATCGAGCAC-GTGCCGGCGGTCAAACGCAAGGCGGAGTGGGCGGTCAAGTGGATC-ACA 900133 Query 1456157 AGGAGGGCCTCGACACT---TTGCCGAGCGGCTCGTCG-GCTTTGCCGCGTCGAGGGCAT 1456212 | ||||| ||| | || || || || ||| | ||||| ||||| ||||| Sbjct 900134 ------GGCTCGA-ACTCGCTCGCGGAACGCCTGCTCGCGTTTTGCGCGGTCGAAGGCAT 900186 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||| ||| || ||||| ||||| |||||||||||||||||||| ||||||| Sbjct 900187 CTTGTTCAGCGGCTCGTTTTGCGCGATCTTCTGGCTCAAGAAGCGCGGCCTGCTGCCCGG 900246 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | || | || ||||||||| | ||| |||||||||| Sbjct 900247 GC-TCAGTTTCAGCAACGAACTGATCTCGCGCGACGAAG 900284 Score = 154 bits (170), Expect = 2e-31 Identities = 211/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| |||| ||| |||| | |||||||| ||||| || || ||||| | ||| Sbjct 178786 ATGTCG-AGCAAGTTTTTCATCCACGCGACGCCGACGCTGTTCAACGCCGGGCTGAAGCG 178844 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 | ||| || ||||||||| || | ||| | ||| |||||||||||||| | Sbjct 178845 GCAACAGCTCTCCAGCTGCTTTCTGCTGCAGATGGCCGACGACTCGATCGAGGGCATTTT 178904 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||| ||| |||||||| | ||| |||| || ||||| ||||| | || Sbjct 178905 CGACACGCTGAAGGAGTGCGCGGTGATCAGCAAGTACGCTGGCGGGATCGGGCTCGCGAT 178964 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 |||||| | ||||| || ||| ||| | |||||||| ||||| | |||||| | Sbjct 178965 CCACAAGATCCGCGCGACGAACGCGTACATCGCGGGCACGAACGGGCGCAGCAACGGGAT 179024 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||||| ||||| ||||| || |||| || |||||||||||||||||| || Sbjct 179025 CGTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCGCTACGTCGACCAGGGC 179076 Score = 96.9 bits (106), Expect = 5e-14 Identities = 358/544 (66%), Gaps = 34/544 (6%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 ||||||||||| | ||||| | | || | || | || ||||||||| |||| Sbjct 179977 TGGGACTGGGAGGAGCTGCGCGAGGCGATGGTCAAGTACGGGCTGCGCAACAGCCTGCTG 180036 Query 262939 GTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAG 262998 || |||| ||||| ||||| |||| ||||||||||| || ||| |||| |||||||| Sbjct 180037 GTCGCGCCGATGCCGACGGCGTCGACTTCGCAGATCCTCGGGAACTGCGAGTCGTTCGAG 180096 Query 262999 GTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAAC 263058 |||| ||| | | ||||||||||||||| ||||| || |||| ||||| Sbjct 180097 CCGTACACGTCGAACGTGTTTACGCGCCGCGTGCTCAGCGGCGAGTTCTGCGTGCTCAAC 180156 Query 263059 CGCCACCTGGT-CAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCG-ACTTTCGCGACC 263116 ||| |||| | |||| | | || ||| |||||| || | || || | | Sbjct 180157 AAGCACTTGGTGCTCGCGC-TCTCGAAGCTCGGGCTGTGGTCGGAGGCGCTGAAGC-AGC 180214 Query 263117 GGCTCATTGCGGCAC-AGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGC--CCG 263173 |||||| || |||| | |||||||||||| ||| |||||| | |||| ||| Sbjct 180215 AGCTCATCGC-GCACAACGGCTCGGTGCAG----CTGA--TCGAGGAAATCCCGCAGCCG 180267 Query 263174 ATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGAC--CATTGATAT 263231 || ||||| || |||||||| |||||| | | | | | | | ||| || || Sbjct 180268 --CTGAAGGCGCTGTTCAAGACGACCTGGGAGAT--CAAGCAGCGCAGCTACATCGACAT 180323 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291 | ||| || |||||||| | || |||| ||||||||| || | |||||| Sbjct 180324 GTCGGTCGCGCGCGCGCCGTTCATCTGCCAGTCGCAGTCGCTCTCGCT---CTTCGCCG- 180379 Query 263292 CCCGACGGCCGA------GAGC-ATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCC 263344 || ||||||| | || | ||| |||||| || |||||| | || | Sbjct 180380 --CG-CGGCCGAGCTTTGGTGCGCTGACGAGCATGCACTTTTACGCGTGGAAACAAGGGC 180436 Query 263345 TCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCG 263404 |||| || || | ||||| ||||||| || | ||| | |||| || | ||||| | Sbjct 180437 TCAAAACGGGACTCTACTACCTGCGCATCCAGAGCGCGACGGACGCGATCAAGTTCACGG 180496 Query 263405 TCGA 263408 | || Sbjct 180497 TGGA 180500 >seq768 Length=1243675 Score = 111 bits (122), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 1818081 GTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CTCATAGGGCACGCCCACCTCGTC 1818139 ||||| ||||||| || || || | | |||| || || ||||||||| || ||||| Sbjct 884238 GTCACTAGCTCGGGGAACGTCAGGCACATCGCGATGCTGAT-GGGCACGCCGACTTCGTC 884180 Query 1818140 AATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCC 1818199 | || || | |||||| | ||||||||| ||||||| | |||| ||||||||||| Sbjct 884179 CAGCTCGATGTTAGGGTCGCCGGTGATGACGGTGCGCGCGCTGAAGTCCACGCGCTTGCC 884120 Query 1818200 CATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCCCTTGGT 1818259 ||| |||||||| | || |||||||||||| || || || ||| | || || | Sbjct 884119 CATCAGGTTGCCGCGCAGCCGGCCCTCCTTGCCTTTCAAGCGTTCCCGAATGCTTTTCAT 884060 Query 1818260 GGGCTTGCCCGACCG 1818274 ||||||| |||||| Sbjct 884059 CGGCTTGCGCGACCG 884045 Score = 109 bits (120), Expect = 8e-18 Identities = 196/280 (70%), Gaps = 15/280 (5%) Strand=Plus/Minus Query 1817496 GCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTT-CATGGTGT 1817554 ||| || | |||||||||| ||||||||| ||| ||| || || |||| || | || Sbjct 884665 GCCCATCACGGGCTTGTTGCTCTGCGGCGAGACGATCTGGAAGGGCACGGCGCACAG-GT 884607 Query 1817555 GCGTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGT 1817613 || | ||||||||||| || | | ||| | || || ||||||||||||||||||| Sbjct 884606 GCCGGATTTCGGCGCGCGCCTCGTGCGTCTGCGCCAGGTGCAGGTTCATCTCGTCGCCGT 884547 Query 1817614 CAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCA 1817673 | |||||||| ||||| | |||||| ||||| | || | ||| | ||||| Sbjct 884546 CGAAGTCGGCGTTGTACGGCGAGGTGACGCTGAGGTTCACGCGGAAGGTCGAGTAGGGCA 884487 Query 1817674 TGGGCAC---CACCTTGTGCATGAGCATGGAGCCCA---TGTGGAGTGAGGGCTGCCGGT 1817727 | ||| ||| ||| | |||| || || |||| || ||||||||||||| Sbjct 884486 T---CACGCGCACGCGGTG---GCCCATGATGCTCATCTTGTGCAGCGAGGGCTGCCGGT 884433 Query 1817728 TCATCACCACGGCGTCGCCGGCGCGCAGGTGACGCTCGAC 1817767 | | | |||| |||||||| | ||| ||| |||||||| Sbjct 884432 TGAAGAGCACGAAGTCGCCGGTGAGCAAGTGCCGCTCGAC 884393 Score = 104 bits (114), Expect = 3e-16 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 1816126 CTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCG 1816184 ||| | || ||| | | ||| |||||||||||||| ||| ||| ||| ||| || | Sbjct 885718 CTCGAGCGCCTTCACGAGCCGACGCTGGATGTAGCCG-GTCTCGGAGGTTTTGCACGCAG 885660 Query 1816185 TGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGC 1816244 |||||| | ||| ||||||||||| ||| ||| || |||| ||| ||| | |||| Sbjct 885659 TGTCGATGATGCCTTCGCGGCCGCCCATCGCGTGGAAGAACAGCTCCTGCGGCGTCAGGC 885600 Query 1816245 CGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGGC 1816285 | || |||||||||||| || ||||||||||| |||||| Sbjct 885599 CCTGCAGGTACGAGTTGCGGACGAAGCCGCGGCTGTCGGGC 885559 Score = 87.8 bits (96), Expect = 3e-11 Identities = 150/213 (70%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 1601276 ACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCGGC 1601334 || |||||| ||||| |||| |||| |||||| || ||||| | | ||| || Sbjct 333770 ACGAGCGGCTTCTGCGTGTAGAACAGCACGTGCGCGGACGAGTCGAAGCGGATGC-CGAA 333712 Query 1601335 GTTGAGCGACACG---ACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCG 1601391 ||| ||||| | ||| | | |||||||||||| || ||||||||| |||||| Sbjct 333711 GTT---CGACATGTACACGCCAATCGCCTGCTTGCCCATCGCGCTCTGGTAGACGTTGCG 333655 Query 1601392 CGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAG 1601451 ||||| ||||||||||| || ||||| || | | ||||||| | || | || || Sbjct 333654 CGGCGACTGGTTGTGGTCGGGGAACGGAATCAAGCTCGCGCAGACACCGAAGATCAGGCT 333595 Query 1601452 CGGGTGGACCTCGACGTGCGTAAAGGGCTCGCG 1601484 |||||| | |||| ||||| | ||||||| Sbjct 333594 CGGGTGAATCTCGCAATGCGTGTA--GCTCGCG 333564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177683690670164