Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq768 131 2e-25 seq1 131 2e-25 seq558 122 8e-23 seq391 100 3e-16 >seq768 Length=1243675 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | || || |||||| || | ||| ||||||||| |||||||| || || Sbjct 1130696 CCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1130755 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| |||| |||||| || ||||| |||| ||||||||||||| ||| Sbjct 1130756 AGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGA 1130815 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| || | | | | ||||||| | | |||||| Sbjct 1130816 ATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACC 1130875 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| | || ||||| | || ||||| || || ||||| Sbjct 1130876 TCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 >seq1 Length=3593316 Score = 131 bits (144), Expect = 2e-25 Identities = 174/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 35503 TTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| ||||||||||| | | ||| ||||||||||| || || ||||| ||||| | Sbjct 1031592 TTTAGTTTCCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTAT 1031651 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||||| ||| ||||| | || |||| || || || ||||| ||||| |||||||| | Sbjct 1031652 AATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGAT 1031711 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTC 35680 | | |||| | || ||||| ||| |||||| || | | || | | || || Sbjct 1031712 CTGGTGGAATACCTTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCGATAGTATCCGAT 1031770 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||||| |||| ||||| |||||||| ||||| ||||| || || || ||||||| Sbjct 1031771 GGTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATTC 1031828 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | ||| || | ||| | || || ||||||||||||||||| | | Sbjct 1032512 CCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGAC 1032571 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || || ||||| || || || || ||||| || |||||||| | ||| Sbjct 1032572 AATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGA 1032631 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| ||| || ||| | | || | | || || | |||||| Sbjct 1032632 ATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACT 1032691 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| ||||||||||| ||||| |||||||| Sbjct 1032692 TCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||| |||||||| || || ||| ||||| ||||||||||| | Sbjct 1032284 CCACCACGTAGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGAT 1032343 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | || ||||| ||||| ||||| || |||||||| | ||| Sbjct 1032344 AATGTACGACCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGA 1032403 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| || ||| ||| ||||| ||||| | || | | || || | ||| || Sbjct 1032404 ATTCCCTCTTTATCC-TGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAAC 1032462 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| |||||||| ||||| |||||||| || || ||||| Sbjct 1032463 GTCTAATGTGATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||||||||| | ||| ||||||||||| || || ||||| || || ||||| | Sbjct 1033025 TTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCG 1033084 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| | || || || || ||||| ||||| ||||| || ||||| || | | Sbjct 1033085 ACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTG 1033144 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | || || ||| ||| ||| || |||| | || | | ||||| | ||| Sbjct 1033145 GAATACCTTCTTTATCCTGGAT-TTTAGCTTTCACATTTTCGATAGTGTCCGATGGTTCG 1033203 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || ||||| || ||||||||||| || || || ||||| Sbjct 1033204 ACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || || |||||||||||||||||||||| | Sbjct 1032056 CCACCACGGAGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGAC 1032115 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || |||| ||||| || ||||| ||||| || ||||| || | ||| Sbjct 1032116 AAAGTTCTTCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGA 1032175 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| ||| ||| || || | | || | | ||| || | || || Sbjct 1032176 ATTCCCTCTTTGTCCTGGAT-TTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGAC 1032234 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| || | |||||| || || || ||||| Sbjct 1032235 TTCCAATGTAATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | ||| |||||||| || || ||||||||||| || ||||||| | Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || ||||| ||||| ||||| || ||||| || | ||| Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||| | ||| ||| || || | | || | | ||||| | ||| || Sbjct 1033375 ATGC-CTTCTTTATCTTGAATTTTGGCTTTAACATTTTCGATGGTGTCCGATGGTTCGAC 1033433 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 1033434 TTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCAT 1033481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||||||||||| || || |||||||| |||||||||| Sbjct 1031826 TTCCACCACGGAGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGG 1031885 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||| || | || |||| || ||||| || || ||||| || ||||| || | | Sbjct 1031886 ATAAGGTACGGCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTG 1031945 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---T 35684 ||| | ||||| || ||||| || | | || | | || || |||| | Sbjct 1031946 GAATACCTTCCTTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATC---CGATGGCT 1032002 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| |||||||||||||| || | || || || || || ||||| Sbjct 1032003 CGACTTCCAAAGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 >seq558 Length=611125 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || || | || || ||||||| |||||||| |||||||| Sbjct 303905 CTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAA 303846 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| |||| || ||| |||||| |||||| || | | Sbjct 303845 GATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGGATCTTAGCTTTGACGCT 303786 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||| | | ||||| || | ||| || | || ||||| | || || || Sbjct 303785 CTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGAC 303726 Query 35725 AAATATCTGCAT 35736 |||||||||||| Sbjct 303725 AAATATCTGCAT 303714 >seq391 Length=841353 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 |||| |||||||| ||| || || |||||||||||||||||||| | ||| || ||| Sbjct 250943 AACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGACAATGTCCGC 251002 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 ||||| || ||||| || ||||| || |||||||| || || | |||| | || Sbjct 251003 GAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTCT 251062 Query 35639 TTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGT 35697 || ||| ||| ||| | |||| || | | || ||| | | || || || | | Sbjct 251063 TTATCC-TGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGA 251121 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||||||||| ||||| || ||||| Sbjct 251122 AATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786150635760