Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 396 2e-105
seq535 134 1e-26
seq458 123 2e-23
>seq1
Length=3593316
Score = 396 bits (438), Expect = 2e-105
Identities = 684/985 (69%), Gaps = 28/985 (3%)
Strand=Plus/Plus
Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744
|||||||| | | ||||| |||||||||||||||||||||| || ||| |||||||
Sbjct 929228 GAAAATCCAAATCGTTTTGTTTTGTTTCCAATTCAATATCATGATATTTGGACAATGTAC 929287
Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804
|||||||| | || ||||||||||||| |||||||| ||| | | | || | | |
Sbjct 929288 AAAAAAGCTGAAGCATCATTTTGGACAGTTGAAGAAGTAGATCTAAGCCATGATCTTGTA 929347
Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864
||||||| | |||||| | | ||||||||||| || || || ||||| ||||||
Sbjct 929348 CATTGGAATAAATTAAATTCGAATGAAAAACATTTCATTTCACATGTATTGGCTTTTTTT 929407
Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924
||||| || || || || || ||||||||||| | | || ||| | || || |||
Sbjct 929408 GCTGCAAGTGATGGTATTGTTAATGAAAATTTAGCTGAACGTTTTATTCGTGATGTACAA 929467
Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984
||||||||||||| ||||||||||| ||||||||||| || |||||| ||||||| |||
Sbjct 929468 ATACCAGAAGCACGTTGTTTTTATGGATTTCAAATTGCTATCGAAAATGTTCATTCAGAA 929527
Query 43985 ATGTA--CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGT 44042
||||| || | | |||| |||| || | ||| | | || | || | |
Sbjct 929528 ATGTATTCATTAT--TGATTAATACCTATGTATCGGATCGTAATGAACAAGATTTTCTAT 929585
Query 44043 TTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA 44102
| ||||| ||| | ||||| | | | ||||| | ||||| | ||||
Sbjct 929586 TCAATGCTATACGTAATCTACCTTGTGTAGAGAAAAAAGCTAAATGGGCTATACGTTGGA 929645
Query 44103 TAAATTCAAATGATT------CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156
| | | |||||| | |||| ||||| | | || ||||| | ||| ||||
Sbjct 929646 CACA---AGATGATTCGGTTACATTTGCCGAACGTTTAATTGCATTTGCTGCTGTTGAAG 929702
Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216
| || || ||||| || || ||||| || || |||||| |||| ||||| || | ||||
Sbjct 929703 GAATATTTTTTTCCGGTTCATTTGCAGCAATTTTTTGGCTAAAAAAACGTGGCCTAATGC 929762
Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276
|||| | || ||||||||||| || || ||||||||||| |||||||| |||||||
Sbjct 929763 CTGGTCTTACCTTTTCAAATGAATTGATTTCACGTGATGAAGGATTACATTGTGATTTTG 929822
Query 44277 CTTG---CTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAG 44333
| || ||||| | | |||| | | | || || |||| | |||| |
Sbjct 929823 CCTGTCTTTTGTTTCAT-CATAT-TCGTA----ATCGTCCATCATCACAACGAATTGTTG 929876
Query 44334 ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAA 44393
| ||| || | || || || || || |||||||||||| | || |||||||| |||
Sbjct 929877 AAATTATTATTGATGCTGTTAATATTGAACAAGAATTTCTTACCGATGCATTACCAGTAT 929936
Query 44394 ATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTT 44453
|| || || ||||||| || ||| | | ||||||||||| ||| |||||||
Sbjct 929937 CATTGATCGGTATGAATGCTAAATTAATGTCCGATTATATTGAATATTGTGCCGATCGTT 929996
Query 44454 TACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGG 44513
|| | | ||| | | ||| || ||||| |||| | ||| || |||||||||||||
Sbjct 929997 TATTGGTTGAATTAGATTGTGAAAAACATTATAAAACAACAAATCCATTTGATTTTATGG 930056
Query 44514 AAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGC 44573
|| | || || || ||||| ||| |||| |||||||||||||| |||| ||||||||
Sbjct 930057 AACAAATATCATTAGAAGGTAAATCAAATTTTTTTGAAAAACGTGTTGCCGAATATCAAA 930116
Query 44574 GAATGGGCGTCATGATAACAAGTGACAATAA---ATTTACTACGGATGAAGATTTCTAAT 44630
|| || |||||| | | ||| || | |||| ||| |||| ||||| ||||
Sbjct 930117 AAAGTGGTGTCATGTCACGACCTGAAGATCAGGTATTTGTTACCGATGCTGATTTTTAAT 930176
Query 44631 TAATCAGAAAACTTGATTTGGTTAA 44655
|| | |||||| |||| ||||
Sbjct 930177 CAA-AAAAAAACT--ATTTAATTAA 930198
>seq535
Length=823324
Score = 134 bits (148), Expect = 1e-26
Identities = 437/673 (65%), Gaps = 8/673 (1%)
Strand=Plus/Minus
Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAA-TTGGG 19331
|| || ||| | || |||| || ||||| ||| || | || | || || || ||||
Sbjct 329899 ATATTCCGTCGGGCTTTTGCATCTCGTGTATTTCCTCCTGAGATAATCGAAGAACTTGGT 329840
Query 19332 ATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAAT 19391
|| |||||||||||||| || | || | ||| ||||| ||| ||| || || || ||
Sbjct 329839 ATC-AAACATGTTCGTGGTATTCTTCTATTTGGTCCACCTGGTACTGGCAAGACTTTGAT 329781
Query 19392 TGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGA 19451
|| ||| | || | ||| | | | | || ||||| || ||||| ||| |
Sbjct 329780 GGCTAGACAGATTGGAAAAATGTTGAACGCTCGTGAACCAAAAATCGTTAATGGACCTCA 329721
Query 19452 AATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGC 19511
||| ||| | || ||||| || |||| |||| ||| | || ||||| | || ||
Sbjct 329720 AATATTAGACAAGTATGTTGGCGAATCTGAAGCAAACATTCGTAAATTGTTCGAAGATGC 329661
Query 19512 TGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGA 19571
||||||||||||| ||| | || ||| || ||| |||||||| || | |||||
Sbjct 329660 TGAAGAAGAACAAGCACGAATGGGTATCAATAGCGGTTTACACATTATTATTTTCGATGA 329601
Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG--TGTAAAT--GGAGTACATGACAC 19625
| | || || ||||| ||| |||| || ||| | | || | || ||||| ||
Sbjct 329600 AATCGATGCCATCTGCAAGGCTCGAGGATCGGTGGCCGGAACATCGGCCGTTCATGATAC 329541
Query 19626 TGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGT 19685
||||||||||| | || | ||| | || || ||| | ||||| || || |||||
Sbjct 329540 AGTTGTCAATCAGTTGTTGGCCAAAATTGATGGCGTTGATTCGCTGAACAACATCTTAGT 329481
Query 19686 TATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTT 19745
|| || |||||||| | || | || || || || | ||||| ||||| |
Sbjct 329480 CATCGGTATGACTAACCGTAAAGACATGATTGATGAGGCATTGCTTCGACCTGGTCGACT 329421
Query 19746 GGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT 19805
||| | | || ||||| | | || ||||| || ||||| |||| || |||||
Sbjct 329420 TGAAGTGCAAATGGAAATCAGTCTTCCTAATGAAGAAGGTCGTGTTCAAATATTGAACAT 329361
Query 19806 ACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAAT 19865
||||| | ||||| || | || | |||||| || | |||| |
Sbjct 329360 TCATACCAGTAAAATGCGTCAGTACAAAAAAGTTGCGCCCGATGTTGACATTCGAGAATT 329301
Query 19866 TGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCA 19925
||| | || ||||| | | ||| || ||| |||| || ||||| ||||| || ||
Sbjct 329300 GGCAACATTGACTAAAAATTTTTCCGGTGCCGAAATTGAAGGCTTAGTTAGGGCGGCTCA 329241
Query 19926 ATCAATTGCAATG 19938
||||| ||| |||
Sbjct 329240 ATCAACTGCTATG 329228
>seq458
Length=503182
Score = 123 bits (136), Expect = 2e-23
Identities = 191/273 (70%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751
|| || ||| | || |||||| | |||||| || ||| |||||| | ||||||
Sbjct 281024 TTACCATTGATCACAACAAAACGTGTATTTTGGCGTGGTGTTGTTGAAGAATTATTATGG 280965
Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811
||||| ||||||| ||| || | || |||||||| |||| ||| || | |||||| ||
Sbjct 280964 TTTATAAAAGGTTCAACTGATTCGAAAAAATTATCCGAAAAAGGTGTAAAAATTTGGGAT 280905
Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871
|| | |||| ||| || | | ||| | || || ||| | | |||||||||
Sbjct 280904 GCAAATGGTTCAAAAGAATTTCTTGATAGTCTTGGTTTTATTGATCGTCAAGAAGGTGAT 280845
Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTAC 40931
|| |||||||||||||| ||||| | | |||||||||| || ||||| || |
Sbjct 280844 CTAGGTCCTGTTTATGGTTTTCAATGGAGACATTTTGGTGCCGAATATCGTGATAATCAA 280785
Query 40932 TCTGATTATACCAATAAAGGAATGGATCAATTA 40964
||||||||| | |||| || |||||||||
Sbjct 280784 ACTGATTATAATGGTCAAGGTATTGATCAATTA 280752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397449596238610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |