Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 396 2e-105 seq535 134 1e-26 seq458 123 2e-23 >seq1 Length=3593316 Score = 396 bits (438), Expect = 2e-105 Identities = 684/985 (69%), Gaps = 28/985 (3%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| | | ||||| |||||||||||||||||||||| || ||| ||||||| Sbjct 929228 GAAAATCCAAATCGTTTTGTTTTGTTTCCAATTCAATATCATGATATTTGGACAATGTAC 929287 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 |||||||| | || ||||||||||||| |||||||| ||| | | | || | | | Sbjct 929288 AAAAAAGCTGAAGCATCATTTTGGACAGTTGAAGAAGTAGATCTAAGCCATGATCTTGTA 929347 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 ||||||| | |||||| | | ||||||||||| || || || ||||| |||||| Sbjct 929348 CATTGGAATAAATTAAATTCGAATGAAAAACATTTCATTTCACATGTATTGGCTTTTTTT 929407 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||||| || || || || || ||||||||||| | | || ||| | || || ||| Sbjct 929408 GCTGCAAGTGATGGTATTGTTAATGAAAATTTAGCTGAACGTTTTATTCGTGATGTACAA 929467 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984 ||||||||||||| ||||||||||| ||||||||||| || |||||| ||||||| ||| Sbjct 929468 ATACCAGAAGCACGTTGTTTTTATGGATTTCAAATTGCTATCGAAAATGTTCATTCAGAA 929527 Query 43985 ATGTA--CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGT 44042 ||||| || | | |||| |||| || | ||| | | || | || | | Sbjct 929528 ATGTATTCATTAT--TGATTAATACCTATGTATCGGATCGTAATGAACAAGATTTTCTAT 929585 Query 44043 TTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA 44102 | ||||| ||| | ||||| | | | ||||| | ||||| | |||| Sbjct 929586 TCAATGCTATACGTAATCTACCTTGTGTAGAGAAAAAAGCTAAATGGGCTATACGTTGGA 929645 Query 44103 TAAATTCAAATGATT------CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 | | | |||||| | |||| ||||| | | || ||||| | ||| |||| Sbjct 929646 CACA---AGATGATTCGGTTACATTTGCCGAACGTTTAATTGCATTTGCTGCTGTTGAAG 929702 Query 44157 GCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGC 44216 | || || ||||| || || ||||| || || |||||| |||| ||||| || | |||| Sbjct 929703 GAATATTTTTTTCCGGTTCATTTGCAGCAATTTTTTGGCTAAAAAAACGTGGCCTAATGC 929762 Query 44217 CTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTG 44276 |||| | || ||||||||||| || || ||||||||||| |||||||| ||||||| Sbjct 929763 CTGGTCTTACCTTTTCAAATGAATTGATTTCACGTGATGAAGGATTACATTGTGATTTTG 929822 Query 44277 CTTG---CTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAG 44333 | || ||||| | | |||| | | | || || |||| | |||| | Sbjct 929823 CCTGTCTTTTGTTTCAT-CATAT-TCGTA----ATCGTCCATCATCACAACGAATTGTTG 929876 Query 44334 ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAA 44393 | ||| || | || || || || || |||||||||||| | || |||||||| ||| Sbjct 929877 AAATTATTATTGATGCTGTTAATATTGAACAAGAATTTCTTACCGATGCATTACCAGTAT 929936 Query 44394 ATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTT 44453 || || || ||||||| || ||| | | ||||||||||| ||| ||||||| Sbjct 929937 CATTGATCGGTATGAATGCTAAATTAATGTCCGATTATATTGAATATTGTGCCGATCGTT 929996 Query 44454 TACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGG 44513 || | | ||| | | ||| || ||||| |||| | ||| || ||||||||||||| Sbjct 929997 TATTGGTTGAATTAGATTGTGAAAAACATTATAAAACAACAAATCCATTTGATTTTATGG 930056 Query 44514 AAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGC 44573 || | || || || ||||| ||| |||| |||||||||||||| |||| |||||||| Sbjct 930057 AACAAATATCATTAGAAGGTAAATCAAATTTTTTTGAAAAACGTGTTGCCGAATATCAAA 930116 Query 44574 GAATGGGCGTCATGATAACAAGTGACAATAA---ATTTACTACGGATGAAGATTTCTAAT 44630 || || |||||| | | ||| || | |||| ||| |||| ||||| |||| Sbjct 930117 AAAGTGGTGTCATGTCACGACCTGAAGATCAGGTATTTGTTACCGATGCTGATTTTTAAT 930176 Query 44631 TAATCAGAAAACTTGATTTGGTTAA 44655 || | |||||| |||| |||| Sbjct 930177 CAA-AAAAAAACT--ATTTAATTAA 930198 >seq535 Length=823324 Score = 134 bits (148), Expect = 1e-26 Identities = 437/673 (65%), Gaps = 8/673 (1%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAA-TTGGG 19331 || || ||| | || |||| || ||||| ||| || | || | || || || |||| Sbjct 329899 ATATTCCGTCGGGCTTTTGCATCTCGTGTATTTCCTCCTGAGATAATCGAAGAACTTGGT 329840 Query 19332 ATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAAT 19391 || |||||||||||||| || | || | ||| ||||| ||| ||| || || || || Sbjct 329839 ATC-AAACATGTTCGTGGTATTCTTCTATTTGGTCCACCTGGTACTGGCAAGACTTTGAT 329781 Query 19392 TGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGA 19451 || ||| | || | ||| | | | | || ||||| || ||||| ||| | Sbjct 329780 GGCTAGACAGATTGGAAAAATGTTGAACGCTCGTGAACCAAAAATCGTTAATGGACCTCA 329721 Query 19452 AATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGC 19511 ||| ||| | || ||||| || |||| |||| ||| | || ||||| | || || Sbjct 329720 AATATTAGACAAGTATGTTGGCGAATCTGAAGCAAACATTCGTAAATTGTTCGAAGATGC 329661 Query 19512 TGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||||||| ||| | || ||| || ||| |||||||| || | ||||| Sbjct 329660 TGAAGAAGAACAAGCACGAATGGGTATCAATAGCGGTTTACACATTATTATTTTCGATGA 329601 Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG--TGTAAAT--GGAGTACATGACAC 19625 | | || || ||||| ||| |||| || ||| | | || | || ||||| || Sbjct 329600 AATCGATGCCATCTGCAAGGCTCGAGGATCGGTGGCCGGAACATCGGCCGTTCATGATAC 329541 Query 19626 TGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGT 19685 ||||||||||| | || | ||| | || || ||| | ||||| || || ||||| Sbjct 329540 AGTTGTCAATCAGTTGTTGGCCAAAATTGATGGCGTTGATTCGCTGAACAACATCTTAGT 329481 Query 19686 TATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTT 19745 || || |||||||| | || | || || || || | ||||| ||||| | Sbjct 329480 CATCGGTATGACTAACCGTAAAGACATGATTGATGAGGCATTGCTTCGACCTGGTCGACT 329421 Query 19746 GGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT 19805 ||| | | || ||||| | | || ||||| || ||||| |||| || ||||| Sbjct 329420 TGAAGTGCAAATGGAAATCAGTCTTCCTAATGAAGAAGGTCGTGTTCAAATATTGAACAT 329361 Query 19806 ACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAAT 19865 ||||| | ||||| || | || | |||||| || | |||| | Sbjct 329360 TCATACCAGTAAAATGCGTCAGTACAAAAAAGTTGCGCCCGATGTTGACATTCGAGAATT 329301 Query 19866 TGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCA 19925 ||| | || ||||| | | ||| || ||| |||| || ||||| ||||| || || Sbjct 329300 GGCAACATTGACTAAAAATTTTTCCGGTGCCGAAATTGAAGGCTTAGTTAGGGCGGCTCA 329241 Query 19926 ATCAATTGCAATG 19938 ||||| ||| ||| Sbjct 329240 ATCAACTGCTATG 329228 >seq458 Length=503182 Score = 123 bits (136), Expect = 2e-23 Identities = 191/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 || || ||| | || |||||| | |||||| || ||| |||||| | |||||| Sbjct 281024 TTACCATTGATCACAACAAAACGTGTATTTTGGCGTGGTGTTGTTGAAGAATTATTATGG 280965 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| ||||||| ||| || | || |||||||| |||| ||| || | |||||| || Sbjct 280964 TTTATAAAAGGTTCAACTGATTCGAAAAAATTATCCGAAAAAGGTGTAAAAATTTGGGAT 280905 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871 || | |||| ||| || | | ||| | || || ||| | | ||||||||| Sbjct 280904 GCAAATGGTTCAAAAGAATTTCTTGATAGTCTTGGTTTTATTGATCGTCAAGAAGGTGAT 280845 Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTAC 40931 || |||||||||||||| ||||| | | |||||||||| || ||||| || | Sbjct 280844 CTAGGTCCTGTTTATGGTTTTCAATGGAGACATTTTGGTGCCGAATATCGTGATAATCAA 280785 Query 40932 TCTGATTATACCAATAAAGGAATGGATCAATTA 40964 ||||||||| | |||| || ||||||||| Sbjct 280784 ACTGATTATAATGGTCAAGGTATTGATCAATTA 280752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449596238610