Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq335 118 3e-21 >seq335 Length=939964 Score = 118 bits (130), Expect = 3e-21 Identities = 496/770 (64%), Gaps = 30/770 (4%) Strand=Plus/Plus Query 254759 CATGCGACCCCGACTCTCTTCACGGCCGGTCTGAAGCGCCAAACCTTGGCCAGCTGCTAC 254818 || ||||| ||||| || |||| ||||| |||||||| ||| | ||||||||| Sbjct 178807 CACGCGACGCCGACGCTGTTCAACGCCGGGCTGAAGCGGCAACAGCTCTCCAGCTGCTTT 178866 Query 254819 CTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCA 254878 || ||| || || ||| ||| | ||||| ||||| ||||| | ||||| Sbjct 178867 CTGCTGCAGATGGCCGACGACTCGATCGAGGGCATTTTCGACACGCTGAAGGAGTGCGCG 178926 Query 254879 TTCGTGAGTCAATCGAGC-GGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGG 254937 | | || ||| || ||||| | || ||| ||| ||| | ||||| | | Sbjct 178927 GTGATCAG-CAAGTACGCTGGCGGGATCGGGCTCGCGATCCACAAGATCCGCGCGAC--G 178983 Query 254938 CACACCGAT-TCGCTCG-ACGAACGGACGGAGCGGCGGCATTATACCAATGATCCGTGTG 254995 || | | |||| | |||||||| || ||| ||| || | || ||| | || ||| Sbjct 178984 AACGCGTACATCGCGGGCACGAACGGGCGCAGCAACGGGATCGTGCCGATGCTGCGCGTG 179043 Query 254996 TTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACC 255055 |||||| || ||||||||||| || || |||||||| ||| ||| | ||| | Sbjct 179044 TTCAACGCGACCGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAAGGCGGCTTCGCG 179103 Query 255056 ATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACC 255115 ||||||||||||||||||||||| ||||| ||| | |||| ||| | Sbjct 179104 ATCTACCTGGAGCCGTGGCACGCAGACATCTTCGAGTTCATCGAGCTGCGGCGCAACCAC 179163 Query 255116 GGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTG--------CG 255167 |||| ||| ||| || ||| |||| ||| || |||| |||| || Sbjct 179164 GGCAACGAAGAGTTG--CGCACGCG------GGACCTCTTCCTGGGGCTGTACATCAACG 179215 Query 255168 ATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTAT 255227 | |||| ||||| |||||||| ||||| ||||| || ||||||||| | Sbjct 179216 ACTTGTTCATGCGCCGCGTGGACGAAGACGGCGTGTGGAGTCTGATGTGTCCCGCGCAGT 179275 Query 255228 CGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACGAG- 255286 |||| || | |||| ||||| | ||||| || ||||| | |||||| Sbjct 179276 CGCCGGGCTTGTTCGAAGTCTGGGGCGCGGAGTTCGACGCGCTGTACACGCGCTACGAGG 179335 Query 255287 -CGTGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCG 255345 || || | || ||||| || || ||| ||| | |||||| || ||| Sbjct 179336 CCGAGCAG--CGCTTCGTGCGGCAGGTGAAGGCGCGCGCGCTCTGGACGGTCATTGTGAA 179393 Query 255346 CATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGAC-CACATAAACGCACGGT 255404 || |||| | || || || | |||| | | || |||| ||| | || |||| || Sbjct 179394 CACGCAGATCGAGACGGGCAATCCGTACTTGGTGTACAAGGACGCGTGCAACCGCA-AGT 179452 Query 255405 CGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGTTGC 255464 ||||||| || ||| ||| || || | ||||||||||||||| || | | | Sbjct 179453 CGAACCAGCGGAACCTCGGCACCATCCAGTCCTCGAACCTGTGCACGGAAGTGGTGCAGT 179512 Query 255465 ACACGTCAGCGC-AAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCGCT 255513 ||||||| |||| | ||| | || || |||||| | ||||| | ||||| Sbjct 179513 ACACGTC-GCGCGAGGAGATCGCGGTGTGCAACCTCGCGTCGCTGTCGCT 179561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588309096566290