Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq569 163 4e-35 seq1212 113 6e-20 seq768 95.1 2e-14 >seq569 Length=351751 Score = 163 bits (180), Expect = 4e-35 Identities = 426/640 (67%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 ||||| |||| ||| ||||||||||| ||||||||||||| | ||||||||||| || Sbjct 124546 TAGATATTTGATGTATATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCGGTTGAT 124487 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||||||||||||||| | ||| | ||| || |||| ||| | | || ||| Sbjct 124486 GCTGTTGGCATTGGTGCAACCAATAAACTATTTCGAATACCATATTTGGAAATTTTTTCT 124427 Query 110828 TTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 || | || ||| | | || | | ||||| | || | |||||| ||| | || | Sbjct 124426 TTCAATTCAGACCAATTCCAAAGAT-CGGTTGGTGT-ACGATTCCACATATCATATTGTA 124369 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | |||| || | || || || | | | |||||||| | ||| | ||| || | Sbjct 124368 GAATACCTTTTGATACTGGTGATCCTTGATAAGTTTCATATGGACCATATTGTTCTGCTA 124309 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 ||||||| || || |||| | | | ||| || |||||||| || | |||||| | Sbjct 124308 ATTCACAACTTGCTTCCAATGCACCATAATAAATTGTTTCAAATATTTGGATATTCATTT 124249 Query 111006 CCTTGGCTTC--ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 || ||||| | || ||| ||| || || | | | | ||| |||| || | ||| Sbjct 124248 TTTTTGCTTCCAAACT--TTCATATGGATAACGTAATAGACTGAATGCATCGGCTAAACC 124191 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AAC 111120 ||| ||||| | |||||||||| || || | ||| || || ||||| | Sbjct 124190 TTGTACACCAAGTCCAATAGGTCGATGACGTAAATTTGAAAGTC---TTGTCTCCGGTAA 124134 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| |||| | ||||| | | ||||| |||||| || | | || |||| Sbjct 124133 TGGATAATAATTACCATCAATAATTTTGTTTAAATTTTTTGTCATTACTTTAACAATTTT 124074 Query 111181 ATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | |||||||||||||||||| | ||||| | || || ||| | ||| | | | Sbjct 124073 TTTAAGTTTTTCATAATCAAATTGACCGAGT-TTTTGATCAACAAAACGTGGTAATGAAA 124015 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | ||||| ||||| || || ||| ||||| || || || | ||||||||||| Sbjct 124014 TCGATGCTAAATTACATACGGCCACTTCATCTGGTGATGAATATTCAACAATTTCTGTAC 123955 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 | | || |||| ||||| || || | ||| | ||| || Sbjct 123954 AAAGATTTGAACATTTAATTGTACCAAGATTTTGTTGATT 123915 >seq1212 Length=1133891 Score = 113 bits (124), Expect = 6e-20 Identities = 272/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||||||||| || | || | || | |||||||||||| || |||||||| || Sbjct 869870 CGATCAAAACGACCAGGCCTTAGCAATGCTTTATCAAGGATATCTACACGATTAGTAGCG 869929 Query 11510 GCAATAACCACAATGCC---AGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 || | || |||| | || | |||| || |||||||| ||| | ||||||| Sbjct 869930 GCTAACACAACAACGTTTGAAGCCGTATTG---AAACCATCCATTTCGACTAATAATTGA 869986 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCC 11626 || | ||| | ||| ||| || | |||| || ||| |||| || Sbjct 869987 TTTAATGTGTTTTCCTGTTCACTATGACCACCTATACTACGGCCACCACGTTTACGTCCA 870046 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || |||||||| || | ||| ||||| ||||| || || ||| |||| Sbjct 870047 ACAGCATCGATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAAC 870106 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA- 11745 | ||| ||||| | | | ||| |||||||||||||| || | ||| | | |||| Sbjct 870107 ATATCTCGAACACGTGAAGGACCAACACCAACAAACATTTCTAGAAACTCGGAACCAGAT 870166 Query 11746 GCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 || | |||||| || || || | |||||| || | ||| ||| | | || || || Sbjct 870167 ACAGT-GATGAAAGGCACTTTAGCTTCACCGGCTGTTGCTTTGGCCAACAAAGTTTTGCC 870225 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||||| || || | ||||| |||||| || || || ||||| Sbjct 870226 AGTACCAGGTGGTCCAGTTAGAAGTGCGCCTTTTGGAATTTTAGCACC 870273 Score = 100 bits (110), Expect = 4e-16 Identities = 264/397 (66%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTT-AAGGAGTCACCACAAAACGAG 9218 |||||||||| | | ||||| ||| |||||| || ||| ||| ||| ||| || Sbjct 1007892 TCTATCAAGCAAGTACTTCAGAATTGTATGGTAAAGTACAAGAAGT-ACCGCAACGTGAA 1007950 Query 9219 GAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTC 9278 ||||| || || ||||| || ||||| || |||| || ||||| | Sbjct 1007951 ACAACACCATTTTATCCACGATCTCCATACGGTGTTGCAAAATCATTTGCCTATTGGATT 1008010 Query 9279 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 9338 || ||||| || || |||| | | ||||||| | || || || ||||| ||| Sbjct 1008011 GTTGTCAATTATCGTGAAGCTTATGAAATGTTTGCCGTCAATGGTATTCTATTCAATCAT 1008070 Query 9339 GAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAGG-GTATCAAAC 9396 |||||||| ||||| |||| | ||||| || |||||||| || || || ||| Sbjct 1008071 GAATCACCTAGACGTGGTGAAACATTTGTCACACGTAAGATTACACGTGGTGTGGCAA-- 1008128 Query 9397 AAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATT 9456 |||| | | | | || ||||| ||||||||||| | | | | |||||| Sbjct 1008129 AAATTGTTCTTAATCGACAAGAATTCATCGAATTGGGTAATTTGGATTCAAAACGAGATT 1008188 Query 9457 GGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCG 9516 |||| || || || ||||||||||| |||||| | ||| | |||||||| | | | Sbjct 1008189 GGGGCCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAAAATCCGG 1008248 Query 9517 ACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGT 9553 | || | ||| | ||||| ||||| | |||||||| Sbjct 1008249 AAGATTTTGTCATTGCAACCGGTGAAGCACATTCAGT 1008285 >seq768 Length=1243675 Score = 95.1 bits (104), Expect = 2e-14 Identities = 206/303 (68%), Gaps = 13/303 (4%) Strand=Plus/Plus Query 181773 AGTTTTGTGAAGATATACCTCGTTTGAGAAGCGTCTTTACCACCCA---TGAGACGCGTA 181829 || || ||||||||||| | ||| || ||||| || ||| || ||| | Sbjct 748719 AGCTTCGTGAAGATATAGCGCGTCGCGGACGCGTCGCGCCCGCCCTCTTTGCGAC---TG 748775 Query 181830 CCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCC 181889 ||||| ||||| || |||||||| ||||| | |||||| | || | | | ||| Sbjct 748776 CCAAACTGACCGCACGGCTCAAGCAGGTTCAGGTTGTTCGTTCCGACGAACTGCTGCGCC 748835 Query 181890 AACTTAACGATGGTATCCGCAAGGGACACTTCACCGTGGTGGTAA--GCTGACTTGTCCG 181947 | || |||| || | ||||| || |||| ||||||||||| |||||| ||| | Sbjct 748836 ATGTTCACGACCGTCTGCGCAATCGATTCTTCGCCGTGGTGGTAGCTGCTGAC--GTCTG 748893 Query 181948 CAACATATGCCGCCAACTGTGCCACCTTCATTTC--ATC-TTTGAGGTTCTTGTGGAAGC 182004 | || || || ||||| |||||||||||||| | | ||||||||| | ||| Sbjct 748894 CGACGTAGCTTGCGAACTGCGCCACCTTCATTTCCGAGCGCACGAGGTTCTTTTTGAACG 748953 Query 182005 AAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGC 182064 | |||| |||||| | ||||| ||||| || || ||| |||| | | ||| |||| Sbjct 748954 CGCCGTACAGCACTTTGCGCTGCGCCGGCTTCAGCCCGTCCACCATGTTCGGAATCGAGC 749013 Query 182065 GCT 182067 ||| Sbjct 749014 GCT 749016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021621771200