Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq335 131 2e-25 >seq335 Length=939964 Score = 131 bits (144), Expect = 2e-25 Identities = 551/854 (65%), Gaps = 21/854 (2%) Strand=Plus/Minus Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 ||||| || || ||||| | | |||| || ||||||| | | |||||||||| Sbjct 179552 GACGCGAGGTTGCACACCGCGATCTCCTCGCGCGACGTGTACTGCACCACTTCCGTGCAC 179493 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| || || |||||||| | |||| || || ||||| ||| ||||| ||| Sbjct 179492 AGGTTCGAGGACTGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGCACGCGTCC 179433 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| | || ||| || | |||||||| | || | || | ||| || |||||| Sbjct 179432 TTGTACACCAAGTACGGATTGCCCGTCTCGATCTGCGTGTTCACAATGACCGTCCAGAGC 179373 Query 118896 TCGGCAGCTGGCACAGTGGCGTTGGCT-CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || || ||| || || | ||| ||| ||||||| ||||| || || Sbjct 179372 GCGCGCGCCTTCACC-TGCCGCACGAAGCGCTGCTCGGCCTCGTAGCGCGTGTACAGCGC 179314 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || ||||| | ||| | | || | | || || | || | || || | ||| Sbjct 179313 GTCGAACTCCGCGCCCCAGACTTCGAACAAGCCCGGCGACTGCGCGGGACACATCAGACT 179254 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || | || || || || |||||| | ||| ||| | ||| || ||| Sbjct 179253 CCACACGCCGTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTACAGCCCCAGGAA 179194 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 ||| ||||| ||| ||||| | || || ||| | |||| ||| | || || | Sbjct 179193 GAGGTCCCGCGTGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTCGATGAACTCGAA 179134 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGC 119191 ||| || ||||||||||| |||||||| | ||||| || || || | || | Sbjct 179133 GATGTCTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCGCTTGCCGCCGCC 179074 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | ||| || ||||| || || || ||||| || | ||| || | | Sbjct 179073 CTGGTCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGGCACGATCCCGTTGCT 179014 Query 119252 TTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 | || || || ||| ||| |||| | || | || | || | |||||| | Sbjct 179013 GCGCCCGTTCGTGCCCGCGATGTACGCG--TTCGTCGCGCGGATCTTGTGGATCGCGAGC 178956 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 || || || || || |||| ||| |||||||||| | || || || | || || Sbjct 178955 CCGATCCCGCCAGCGTACTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGAAAATGCCC 178896 Query 119370 TCGATCGAGTC-ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||||||||| | || ||| | || |||||||| || | || ||| | | Sbjct 178895 TCGATCGAGTCGTCGGCCATCTGC-AGCAGAAAGCAGCTGGAGAGCTGTTGCC--GCTTC 178839 Query 119429 A--CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484 | || |||||||| || || || ||||||||||||| | | |||| |||||| Sbjct 178838 AGCCCGGCGTTGAACAGCGTCGGCGTCGCGTGGATGA--AAAACTTGCTCGACATCAGCC 178781 Query 119485 CGTAGGTCTCCAAGA-CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 ||| |||||||| | | |||| || ||| || ||| || ||| ||| || ||||| Sbjct 178780 GGTACGTCTCCAAAATCCGCGGCAA-GTCGCCCAAGTGGATCGCGACCGACACGCGCATG 178722 Query 119544 AACATGTATTGGGG 119557 |||||||| || || Sbjct 178721 AACATGTACTGCGG 178708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424980358320