Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq569 167 3e-36 seq1 125 8e-24 seq1212 114 2e-20 seq768 100 3e-16 >seq569 Length=351751 Score = 167 bits (184), Expect = 3e-36 Identities = 458/695 (66%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| || || ||||| ||||| ||| | |||||||| ||||| | || ||| Sbjct 123858 CAAATTGAAACCGGTACTCCATATATGTTATACAAAGATCATTGTAATCGTAAATCAAAT 123917 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 ||| | ||| | ||| || || |||| ||||| ||||||||||| | |||| | || Sbjct 123918 CAACAAAATCTTGGTACAATTAAATGTTCAAATCTTTGTACAGAAATTGTTGAATATTCA 123977 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 |||||| ||| || ||||| | ||||| || | | || | ||| ||| Sbjct 123978 TCACCAGATGAAGTGGCCGTATGTAATTTAGCATCGATTTCATTACCACGTTTTGTTGAT 124037 Query 105089 CCAGAGACAAAGACA-TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 | | | || | || ||||||||||||||||| | || || ||| | || || Sbjct 124038 CAAAA-ACTCGGTCAATTTGATTATGAAAAACTTAAAAAAATTGTTAAAGTAATGACAAA 124096 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATC 105204 ||| |||||| | |||||||| | |||| ||| || | ||||| | | || Sbjct 124097 AAATTTAAACAAAATTATTGATGGTAATTATTATCCATTACCGGAGACAAGACTT---TC 124153 Query 105205 TAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 ||| | | || || || ||||| || ||||| || ||| | || |||| ||||| ||| Sbjct 124154 AAATTTACGTCATCGACCTATTGGACTTGGTGTACAAGGTTTAGCCGATGCATTCAGTCT 124213 Query 105265 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGAC 105324 | || | ||| ||| ||||| || |||| ||| | |||||||| || Sbjct 124214 ATTACGTTATCCATATGAAAGTTTGGAAGCAAAAAAAATGAATATCCAAATATTTGAAAC 124273 Query 105325 CATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGA 105384 || ||| | | || | || || |||| || || ||||| ||||||||||||| Sbjct 124274 AATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTAGCAGAACAATATGGTCCATATGA 124333 Query 105385 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 105444 ||| | | | || || |||| ||| |||| | || |||| |||||||||| | || | Sbjct 124334 AACTTATCAAGGATCACCAGTATCAAAAGGTATTCTACAATATGATATGTGGAATCGT-A 124392 Query 105445 GACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 105503 ||||| | || | | ||| | | || ||| || | | ||| ||| Sbjct 124393 CACCAACCGATCTTTGGAATTGGTCTGAATTGAAAGAAAAAATTTCCAAATATGGTATTC 124452 Query 105504 GTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 105563 | || ||| | | | || |||||||||||||| || ||||||||||| | ||||||| Sbjct 124453 GAAATAGTTTATTGGTTGCACCAATGCCAACAGCATCAACCGCACAAATTCTTGGTAATA 124512 Query 105564 ATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 |||||| |||||||| || || | || |||||| Sbjct 124513 ATGAATCATTTGAACCATATACATCAAATATCTAT 124547 >seq1 Length=3593316 Score = 125 bits (138), Expect = 8e-24 Identities = 457/708 (65%), Gaps = 8/708 (1%) Strand=Plus/Plus Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 |||||||| | || |||| ||| ||||| |||||||||||| |||||||||| ||| Sbjct 3537122 GCTATTCTTGAATCACAAATCGAAACTGGAACACCATACATGGTTTACAAAGATCATTGT 3537181 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 || | ||| |||||| | ||| | ||| ||||| |||| ||||| ||||| ||| Sbjct 3537182 AATCGAAAATCAAATCAACAAAATCTCGGTACAATCAAATGTTCGAATCTTTGTACCGAA 3537241 Query 105014 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 105073 || |||||| | || |||||||| || || ||||| || || |||||||| | Sbjct 3537242 ATTGTGGAATATTCATCTAAAGATGAAGTAGCCGTCTGTAATCTAGCTTCAATCGCATTG 3537301 Query 105074 CCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133 || | ||| |||||| | | | | ||||||| ||||||| | | || Sbjct 3537302 AATAAATTTGTTGATCCAAAAAAACGAATCTTTGATTTTGAAAAATTGAAATCCATTGTC 3537361 Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGAC 105192 || ||| || || || ||| |||||| || | || || || || ||| Sbjct 3537362 AAGGTTGTAACTCGTAATCTGGACAAAGTTATCGACGTGACTTACTATCCTGTACCAGA- 3537420 Query 105193 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 |||| || ||| | | || || ||||| || |||||||||| || | || || Sbjct 3537421 AGCTCAACGTTCGAATCTTCGTCATCGACCAATGGGAATCGGTGTTCAAGGATTAGCAGA 3537480 Query 105253 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG--CGAAGGAAATCAATGCG 105310 || || ||| | || | |||| ||| || |||| ||| | ||||| Sbjct 3537481 TGCGTTTATTTTGATGCGTTATCCATTCGATAGTGAAGAAGCTCGATTG--CTCAATATT 3537538 Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370 | || ||||| || || ||| | | | | || |||||| || || || | | Sbjct 3537539 CAGATTTTTGAAACAATTTATTATGGATCATTAGAAACGAGTTGTGAATTAGCCCAAGAA 3537598 Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGAT 105430 | |||| ||||||||| | ||| || || |||| || |||| | || || |||||| Sbjct 3537599 AAAGGTCAATATGAAACTTATGAAGGATCACCAGTATCTAAAGGCATTCTACAGTTTGAT 3537658 Query 105431 ATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAA 105489 |||| |||| | ||||| || | || ||| | | | | || || ||| Sbjct 3537659 ATGT-GGAATCGAAAACCAACAGATCTTTGGGATTGGAATGATTTGAAATCTCGAATCGC 3537717 Query 105490 GGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA 105549 | | || | || || ||| | || ||||||||||||||||||| || || ||||| Sbjct 3537718 TAAATATGGAATACGAAATAGTTTGCTTGTGGCTCCAATGCCAACAGCTTCGACTGCACA 3537777 Query 105550 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| | || || ||||| | | ||||| || || || || || || Sbjct 3537778 AATTCTTGGCAACAATGAGTCTATCGAACCTTATACAACTAATATATA 3537825 >seq1212 Length=1133891 Score = 114 bits (126), Expect = 2e-20 Identities = 270/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| ||||| || | || | || | |||||||||||| || ||||| || ||| Sbjct 869870 CGATCAAAACGACCAGGCCTTAGCAATGCTTTATCAAGGATATCTACACGATTAGTAGCG 869929 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | ||||||| || | ||| ||||||||||| || || | ||| || Sbjct 869930 GCTAACACAACAACGTTTGAAGCCGTATTGAAACCATCCATTTCGACTAATAATTGATTT 869989 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || | |||| ||||| || | |||| || ||| |||| ||| || Sbjct 869990 AATGTGTTTTCCTGTTCACTATGACCACCTATACTACGGCCACCACGTTTACGTCCAACA 870049 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||| || |||||||| || | |||||||| ||||| || || | | |||| | | Sbjct 870050 GCATCGATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 870109 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || || ||||| | || |||||||||||||| || | ||| | | | || ||| Sbjct 870110 TCTCGAACACGTGAAGGACCAACACCAACAAACATTTCTAGAAACTCGGAACCAGATACA 870169 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | |||||| || || |||| |||||| || | ||| ||| | | ||| || || || Sbjct 870170 GT-GATGAAAGGCACTTTAGCTTCACCGGCTGTTGCTTTGGCCAACAAAGTTTTGCCAGT 870228 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||| || || | || || || ||| |||||| || || || Sbjct 870229 ACCAGGTGGTCCAGTTAGAAGTGCGCCTTTTGGAATTTTAGCACC 870273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 253/382 (66%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 7250 ACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAGACACCCTTCTAC 7309 ||||| || ||| ||||||||| | |||| || ||| || ||||| || || Sbjct 1007906 ACTTCAGAATTGTATGGTAAAGTACAAGAAGTACCGCAACGTGAAACAACACCATTTTAT 1007965 Query 7310 CCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTCAAAAATTACCGC 7369 ||||| || ||||| || |||| || ||||| | || ||||| || Sbjct 1007966 CCACGATCTCCATACGGTGTTGCAAAATCATTTGCCTATTGGATTGTTGTCAATTATCGT 1008025 Query 7370 GAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCACCGAGACGA 7429 || |||| | | ||||||| | || || || ||||| ||||||||||| ||||| Sbjct 1008026 GAAGCTTATGAAATGTTTGCCGTCAATGGTATTCTATTCAATCATGAATCACCTAGACGT 1008085 Query 7430 GGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-GTATCAAACAAATCATGAAGGGTG 7487 |||| | ||||||||| |||||||| || || || ||| |||| | | Sbjct 1008086 GGTGAAACATTTGTCACACGTAAGATTACACGTGGTGTGGCAA--AAATTGTTCTTAATC 1008143 Query 7488 AAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGTCACGCGAAGG 7547 | | || ||||| ||||||||||| | | | |||||||||| || || | Sbjct 1008144 GACAAGAATTCATCGAATTGGGTAATTTGGATTCAAAACGAGATTGGGGCCATGCACGTG 1008203 Query 7548 ACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAATATGTAGTAG 7607 | ||||||||||| |||||| | ||| | |||||||| | | || || | ||| | | Sbjct 1008204 ATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAAAATCCGGAAGATTTTGTCATTG 1008263 Query 7608 CAACGGGTGAGACCCATACAGT 7629 |||| ||||| | ||| |||| Sbjct 1008264 CAACCGGTGAAGCACATTCAGT 1008285 >seq768 Length=1243675 Score = 100 bits (110), Expect = 3e-16 Identities = 326/499 (65%), Gaps = 17/499 (3%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 ||||||| ||||| || || | ||||||||||| | |||| | |||| ||||| Sbjct 748570 AACCCGTGCCGATGCCTTCCGCGCCGTTCACGAGCAGTTGCGGGATTACGGGCACGTAGA 748629 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCT--CT 168393 | | |||||| ||||| ||||| | |||| || | || || ||| || Sbjct 748630 ACTTTGGCTCGATGGGCACGTTGTCGTCGTTTTGGTAGTCCAGCAGCGGCTCGTCTTCCT 748689 Query 168394 --CGGATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGA 168451 |||| || || | ||| | | || | ||||| || |||||||| | ||| Sbjct 748690 GCCGGAACAT-GAAC---CGGCAAACGTTCGACAGCTTCGTGAAGATATAGCGCGTCGCG 748745 Query 168452 GACGCATCCTTACCACCCA---TGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGA 168508 ||||| || || ||| || ||| | ||||||||||| ||||||||||| || Sbjct 748746 GACGCGTCGCGCCCGCCCTCTTTGCGAC---TGCCAAACTGACCGCACGGCTCAAGCAGG 748802 Query 168509 TTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAG 168568 || | ||||| | || | | | | | ||||| || || | ||| | ||| | || Sbjct 748803 TTCAGGTTGTTCGTTCCGACGAACTGCTGCGCCATGTTCACGACCGTCTGCGCAATCGAT 748862 Query 168569 ACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTC 168628 |||| ||||||||||| || |||||||| | || ||||||||||| ||| Sbjct 748863 TCTTCGCCGTGGTGGTAGCTGCTGACGTCTGCGACGTAGCTTGCGAACTGCGCCACCTTC 748922 Query 168629 ATCTC--ATC-CTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGC 168685 || || | | | ||| ||||| | ||| |||||| || ||||| |||| ||| Sbjct 748923 ATTTCCGAGCGCACGAGGTTCTTTTTGAACGCGCCGTACAGCACTTTGCGCTGCGCCGGC 748982 Query 168686 TTGAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACG 168745 || || || ||| |||||| | || || |||| || ||| | ||| || ||| Sbjct 748983 TTCAGCCCGTCCACCATGTTCGGAATCGAGCGCTGCACGTCGTACCGACTAAACAGCACG 749042 Query 168746 AGGTCCTTGTGTACAAAGT 168764 || ||||||| | ||||| Sbjct 749043 AGCTCCTTGTTGATAAAGT 749061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251161615280