Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq335 392 4e-104 >seq335 Length=939964 Score = 392 bits (434), Expect = 4e-104 Identities = 845/1242 (68%), Gaps = 30/1242 (2%) Strand=Plus/Minus Query 78712 CCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCG 78771 || ||| ||| ||||| || | ||| || |||| | || | |||||| ||||| ||| Sbjct 179903 CCTTCGCTCGCGGGCGAGCCTTCGAAGCTCGCGTACGGCCCGTGCTCCTTCGCGAGCTCG 179844 Query 78772 CATGACTCGAG--CAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGC 78829 | | |||| | || || || ||| | | |||||||||| |||||| | ||| Sbjct 179843 -ACG-CTCGCGGTCACCGCGCCGAAGTAGATCGTCTCGAAGATGTTCTTGTTCACTTCGT 179786 Query 78830 GCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGA-CATCGGCCAGGCCCTGG 78888 ||||| || |||||||| || | |||| | || || | || || | ||| || Sbjct 179785 TCGCCTCGGGGCTGTCGAACGGCAGCCGCAGCAGC-TGCAGCGCGTCCGCGAAGCCTTGC 179727 Query 78889 ACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAA 78948 |||||||| ||||||| ||||| |||| |||||| || ||| ||||||| ||| Sbjct 179726 ACGCCGATGCCGATCGGCCGGTGCCGCAGGTTGCTGCGCCGCGCCTTCTCGGTCACGTAG 179667 Query 78949 AAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAAT 79008 ||| | ||||| ||| ||||||||| |||| |||| | | |||||| ||| Sbjct 179666 AAGCCCACGTCGATCACGTTGTTCAGGTTCTGCGTCACGATCTTCGCGACCTCGAACAGC 179607 Query 79009 TTGGCGAAATCAAAATGAT--TTC----CTTTGATGAAAGTCGGTAGGCACAGCGATGCC 79062 || || | | || | ||| | | | | | | || || ||||||| || Sbjct 179606 TTCTCGTAGTTGAAGCGCCGCTTCTCGACGTCCACGTACGCGGGCAGCGACAGCGACGCG 179547 Query 79063 AGGTTGCACACGGCCGTCTCGTCCGGGCTA-GAAACCTCGATGATTTCTGTGCACAAATT 79121 ||||||||||| || |||| || | || | | || | | ||| ||||||| || Sbjct 179546 AGGTTGCACACCGCGATCTCCTC-GCGCGACGTGTACTGCACCACTTCCGTGCACAGGTT 179488 Query 79122 AGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 || |||| ||||||||||| |||| |||||| ||| ||| || ||||||||||| Sbjct 179487 CGAGGACTGGATGGTGCCGAGGTTCCGCTGGTTCGACTTGCGGTTGCACGCGTCCTTGTA 179428 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACG-CCGTCCCAGATGTCCC 79240 || |||||| | || ||||| | ||| | || | || | |||||| ||| | | Sbjct 179427 CACCAAGTACGGATTGCCCGTCTCGATCTGCGTGTTCACAATGACCGTCC-AGAGCGCGC 179369 Query 79241 GGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGA 79300 | ||| || | | | | || || || |||| | ||||| | ||| || Sbjct 179368 GCGCCTTCACCTGCCGCACGAAGCGCTGCTCGGCCTCGTAGCGCGTGTACAGCGCGTCGA 179309 Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG-CACATCAGGTGCCAG 79359 | || | || |||| ||| || |||||| ||| | ||||| |||||||| ||| Sbjct 179308 ACTCCGCGCCCCAGACTTCGAACAAGCCCGGCGACT-GCGCGGGACACATCAGACTCCAC 179250 Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 | |||| | || || |||||| | ||| ||| |||| || ||||||| Sbjct 179249 ACGCCGTCTTCGTCCACGCGGCGCATGAACAAGTCGTTGATGTACAGCCCCAGGAAGAGG 179190 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 || || |||| ||| |||| ||| ||||| | |||||||||| || || | |||| Sbjct 179189 TCCCGCGTGCGCAACTCTTCGTTGCCGTGGTTGCGCCGCAGCTCGATGAACTCGAAGATG 179130 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 || ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct 179129 TCTGCGTGCCACGGCTCCAGGTAGATCGCGAAGCCGCCTTTGCGCTTGCCGCCGCCCTGG 179070 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | |||||| || || || |||||| || || ||||| |||||||| |||| | | Sbjct 179069 TCGACGTAGCGCGCGGTCGCGTTGAACACGCGCAGCATCGGCACGATCCCGTTGCTGCGC 179010 Query 79600 CCGTTCGTCCCGTTGA--TTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCG 79656 |||||||| || || | || || | |||| || || || | | | | || ||| Sbjct 179009 CCGTTCGTGCCCGCGATGTACGCGTTC--GTCGCGCGGATCTT-GTGGATCGCGAGCCCG 178953 Query 79657 ATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCG 79716 || || || | ||||| ||| |||||||||||| ||||| ||| | ||||||||| Sbjct 178952 ATCCCGCCAGCGTACTTGCTGATCACCGCGCACTCCTTCAGCGTGTCGAAAATGCCCTCG 178893 Query 79717 ATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCG 79776 ||||||||||| ||| | ||| |||||||| || | |||| | ||| ||| Sbjct 178892 ATCGAGTCGTCGGCCATCTGCAGCAGAAAGCAGCTGGAGAGCTGTTGCCGCTTCAGCCCG 178833 Query 79777 GCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT---CATCAGATCGTAC 79833 |||||||| || |||||||||||||| |||| ||||| ||| |||||| |||| Sbjct 178832 GCGTTGAACAGCGTCGGCGTCGCGTGGATGAAAAACTT---GCTCGACATCAGCCGGTAC 178776 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 |||||| | ||||| | |||| | |||||| |||||| ||||||||||| | | Sbjct 178775 GTCTCCAAAATCCGCGGCAAGTCGCCCAAGTGGATCGCGACCGACACGCGCATGAACATG 178716 Query 79894 TACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 ||||| ||| |||| ||| || || ||||| ||||| Sbjct 178715 TACTGCGGCCGCTCGACGATCTTTTTGTTCGCCTTCAGCAGG 178674 Score = 333 bits (368), Expect = 3e-86 Identities = 1160/1783 (65%), Gaps = 82/1783 (5%) Strand=Plus/Plus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161 ||| |||||| | |||||||| || |||||| ||||| | |||| | ||||| | Sbjct 178707 GCCGCAGTACATGTTCATGCGCGTGTCGGTCGCGATCCACTTGGGCGACTTGCCGCGGAT 178766 Query 19162 CCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 ||||| ||| |||||| | || ||||| |||| |||||||||||||| || | Sbjct 178767 TTTGGAGACGTACCGGCTGATGT-CGAGCAAGTTTTTCATCCACGCGACGCCGACGCTGT 178825 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| ||| | ||| | || ||||| || || || ||| || | Sbjct 178826 TCAACGCCGGGCTGAAGCGGCAACAGCTCTCCAGCTGCTTTCTGCTGCAGATGGCCGACG 178885 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 || || |||||||| | ||| ||||| |||||||||||| ||| ||||| | | Sbjct 178886 ACTCGATCGAGGGCATTTTCGACACGCTGAAGGAGTGCGCGGTGATCAGCAAGTACGCTG 178945 Query 19341 GGGGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACG--AATCAATGGGA 19397 | || |||||| || | | | | || ||||| || | | || || ||| || | Sbjct 178946 GCGGGATCGGGCTCGCGATCCAC-AAGATCCG--CGCGACGAACGCGTACATCGCGGGCA 179002 Query 19398 CGAAC-GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGG 19456 ||||| || | || | |||| ||||| || ||||| ||||| |||||| || || | Sbjct 179003 CGAACGGGCGCAG-CAACGGGATCGTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCGC 179061 Query 19457 TACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGG 19516 |||||| ||||||| |||||||| ||||| ||| ||||| |||||||| ||||| ||| Sbjct 179062 TACGTCGACCAGGGCGGCGGCAAGCGCAAAGGCGGCTTCGCGATCTACCTGGAGCCGTGG 179121 Query 19517 CACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC 19576 ||||| ||| || | || ||| |||| ||||| | ||||| || |||| ||| ||||| Sbjct 179122 CACGCAGACATCTTCGAGTTCATCGAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCGC 179181 Query 19577 TGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 || ||||||||| || ||| || ||| | |||||| || || | Sbjct 179182 ACGCGGGACCTCTTCCTGGGGCTGTACATCAACGACTTGTTCATGCGCCGCGTGGACGAA 179241 Query 19637 GACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 |||| | ||| |||||||| ||||| | | | || ||| | ||| |||| || Sbjct 179242 GACGGCGTGTGGAGTCTGATGTGTCCCGCGC-AGTCGCCGGGCTTGTTCGAAGTCTGGGG 179300 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGT 19755 || || |||| | | | ||||| | |||| ||| || || ||| | | ||| Sbjct 179301 CGCGGAGTTCGACGCGCTGTACACGCGCTACGAGGCCGAGCAGCGCTTCGTGCGGCAGGT 179360 Query 19756 CCGGGCCCGGGACGTCTGGGACCG-CGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 ||| || | ||| |||| | | | | || | ||| ||||||| |||| |||| Sbjct 179361 GAAGGCGCGCGCGCTCT-GGACGGTCATTGTGAACACGCAGATCGAGACGGGCAATCCGT 179419 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 || || ||||||||||| ||| |||||| || ||| |||| ||||| | ||| Sbjct 179420 ACTTGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCGGAACCTCGGCACCATCC 179479 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCG---GACGAGACTGCCG 19931 |||| || |||||||| || ||| | || || | || | || || |||| || | Sbjct 179480 AGTCCTCGAACCTGTGCACGGAAGTGGTGCAG---TACACGTCGCGCGAGGAGATCGCGG 179536 Query 19932 TGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCC-----TCCTC-CTTCG 19985 |||| || || ||||| |||| ||||| | | ||| | | | | | |||| Sbjct 179537 TGTGCAACCTCGCGTCGCTGTCGCTGCCCGCGTACGTGGACGTCGAGAAGCGGCGCTTCA 179596 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 ||| | || ||| |||||| | | |||| |||| || ||||| ||| |||| Sbjct 179597 ACTACGAGAAGCTGTTCGAGGTCGCGAAGATCGTGACGCAGAACCTGAACAACGTGATCG 179656 Query 20046 ATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCG 20105 | | ||| ||| ||||||| |||||| || |||| ||||||||||||| Sbjct 179657 ACGTGGGCTTCTACGTGACCGAGAAGGCGCGGCGCAGCAACCTGCGGCACCGGCCGATCG 179716 Query 20106 CGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC 20165 |||||||| || ||| | || |||| | | |||| | || | |||||| | Sbjct 179717 GCATCGGCGTGCAAGGCTTCGCGGACGCGCTGCAGCTGCTGCGGCTGCCGTTCGACAGCC 179776 Query 20166 CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT-CCTG 20224 || ||||| ||| | |||||| |||||||||| | | ||| || || | | | Sbjct 179777 CCGAGGCGAACGAAGTGAACAAGAACATCTTCGAGACGATCTACTTCGGCGCGGTGACCG 179836 Query 20225 GAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCG 20284 | ||| ||| ||||| || ||| |||| ||||||| || ||| | || ||||||||| Sbjct 179837 CGAGCGT-CGAGCTCGCGAAGGAGCACGGGCCGTACGCGAGCTTCGAAGGCTCGCCCGCG 179895 Query 20285 TCCGAGGGTATCCTCCAGCCGGACATGTGG----------GGCG-----------TCACT 20323 ||| || | ||||| ||| ||||| |||| | | Sbjct 179896 AGCGAAGGCAAATTCCAGTTCGACTTGTGGAACGAAGAACGGCGCGAGCGGAACTTGCGT 179955 Query 20324 GAGAATGAG----------TTTTGGA-------GCGC-CCTCAAGGTTGAGATCAAGACC 20365 |||| | || | | ||| | || | | ||| | ||||| Sbjct 179956 GAGATTCAGCTCTCGGGCATGTGGGACTGGGAGGAGCTGCGCGAGGCGATGGTCAAG--- 180012 Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||||| |||||| |||| |||||||| |||||||| || ||||| | |||||| Sbjct 180013 TACGGGCTGCGCAACAGCCTGCTGGTCGCGCCGATGCCGACGGCGTCGACTTCGCAGATC 180072 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAAC--ATCTACTTGCGTCGTACAC 20483 | |||||| |||| | ||||||||||||||| | ||| | ||| || ||| | | Sbjct 180073 CTCGGGAACTGCGAGTCGTTCGAGCCGTACACGTCGAACGTGTTTACGCGCCGCGTGCTC 180132 Query 20484 TGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATA 20543 | ||| |||||| | || | ||||||||| |||| | || | |||| ||| Sbjct 180133 AG--CGGCGAGTTCTGCGTGCTCAACAAGCACTTGGTGCTCGCGCTCTCGAAGCTCGGGC 180190 Query 20544 TGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGC-CGGCGGGAGCGTCCAG-GCAT- 20600 |||||||| | ||| | | | | || || | ||| || ||| || Sbjct 180191 TGTGGTCGGAGGCGCTGAAGCA-GCAGCTCATCGCGCACAACGGCTCGGTGCAGCTGATC 180249 Query 20601 -TGGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAG 20659 ||| ||||| ||| || |||| | | || ||| ||||| ||| ||| Sbjct 180250 GAGGAAATCCCGCAGCCGCTGAAGGCGCTGTTCAAGACGACCTGGGAGATCAAGCAGCGC 180309 Query 20660 AGCATCATCGACATGGCGGCCGATCGCGGCGCC-TACATCGACCAGTCCCAGTCGCTCAA 20718 ||| |||||||||| ||| || ||| ||||| | |||| |||||| ||||||||| Sbjct 180310 AGCTACATCGACATGTCGGTCGCGCGC-GCGCCGTTCATCTGCCAGTCGCAGTCGCTCTC 180368 Query 20719 TGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCA 20778 ||||| | | |||||| | | ||||| |||||| | |||| ||| | Sbjct 180369 GCTCTTCGCCGCGCGGCCGAGCTTTGGTGCGCTGACGAGCATGCACTTTTACGCGTGGAA 180428 Query 20779 CAAGGGGCTCAAGACGGGCATGTACTATCTGCGGA-CCCGAGC 20820 | |||||||| ||||| | ||||| ||||| | || |||| Sbjct 180429 ACAAGGGCTCAAAACGGGACTCTACTACCTGCGCATCCAGAGC 180471 Score = 132 bits (146), Expect = 5e-26 Identities = 342/509 (67%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || || ||| ||| |||||| |||||||| | | ||| || | || |||||| ||| Sbjct 899783 TCCTTTTGGACCGCCGAGGAAATTGACCTGTCTGCCGACTTGGACGACTGGGACGCGCTG 899842 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||| |||| ||| ||||||||| || || || || ||||||||||| || || Sbjct 899843 AAGGACGGTGAGCGGCACTTCATCAAGCACGTGCTCGCGTTTTTCGCGGCGAGCGACGGC 899902 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || ||| | || ||| | | || ||||| || | ||| | ||| | ||| Sbjct 899903 ATCGTGCTCGAGAATCTCGCCAGCCGCTTTTTGGTCGAAATGCAGCTGCCCGCTGTCCGC 899962 Query 59793 TCGTTCTACGCGTATCAGTCGTTC--AACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 ||| ||||||| ||| ||| | || |||||||| ||||||||| | Sbjct 899963 GAGTTTTACGCGTTCCAG--GTTGCGATGGAAAACATCCACTCGGAGACGTACAGCTTGC 900020 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAG--AAGGCTG-GTCTGTTCCGTGCCATAG 59907 ||||||| | | || | | | || || || |||| | || | || || || | Sbjct 900021 TGATCGACACCTACCTCGCGCAGCAGGCCGACGAAAAGCTGCGGTTGCTGCGCGCAATCG 900080 Query 59908 AG-ACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTC-CTGG 59965 || |||| || || || |||| || || || ||||| | ||||||| | || | Sbjct 900081 AGCACGTGCCG-GCGGTCAAACGCAAGGCGGAGTGGGCGGTCAAGTGGATCACAGGCTCG 900139 Query 59966 AGCATCATTTGCACAACGTCTCATAGC-TTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 | | || | || |||| || | || |||||| | || ||||| ||||| ||| | Sbjct 900140 AAC-TCGCTCGCGGAACGCCTGCTCGCGTTTTGCGCG-GTCGAAGGCATCTTGTTCAGCG 900197 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 ||||||| || || || ||||||||||| ||||| ||||| |||| || || |||||| Sbjct 900198 GCTCGTTTTGCGCGATCTTCTGGCTCAAGAAGCGCGGCCTGCTGCCCGGGCTCAGTTTCA 900257 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGC 60113 |||||| ||||| || || ||||| ||| Sbjct 900258 GCAACGAACTGATCTCGCGCGACGAAGGC 900286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515735627680