Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq335 210 2e-49 seq768 122 1e-22 >seq335 Length=939964 Score = 210 bits (232), Expect = 2e-49 Identities = 519/779 (67%), Gaps = 14/779 (2%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||| ||||| | ||||||||||| | | | |||||| | ||||| |||| | Sbjct 178707 GCCGCAGTACATGTTCATGCGCGTGTCGGTCGCGATCCACTTGGGCGACTTGCCGCGGAT 178766 Query 53239 CCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCT 53295 ||||||||| | ||| ||| |||| || | ||||| ||||| || || Sbjct 178767 TTTGGAGACGTACCGGCTGATGTCGAGC---AAGTTTTTCATCCACGCGACGCCGACGCT 178823 Query 53296 GTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGA 53355 ||||||||| || ||| | | ||| | || |||||||| ||| || |||| || Sbjct 178824 GTTCAACGCCGGGCTGAAGCGGCAACAGCTCTCCAGCTGCTTTCTGCTGCAGATGGCCGA 178883 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||||||||||| ||||| | ||| ||||| |||||||| || ||| ||||| | Sbjct 178884 CGACTCGATCGAGGGCATTTTCGACACGCTGAAGGAGTGCGCGGTGATCAGCAAGTACGC 178943 Query 53416 GGGTGGTATCGGTATC-CACTGCTCGAACGTCCGTGCGA--ACGGCACACCAATCAAGGG 53472 || || ||||| || | | | | || |||| |||| | || || ||| ||| Sbjct 178944 TGGCGGGATCGGGCTCGCGATCCAC-AAGATCCGCGCGACGAACGCGTAC--ATCGCGGG 179000 Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532 |||||||| | | | || |||||||| ||||| ||||| |||||| || || || Sbjct 179001 CACGAACGGGCGCAGCAACGGGATCGTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCG 179060 Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592 |||||| ||||||| || || |||||||| || ||||| |||||||| |||||||| Sbjct 179061 CTACGTCGACCAGGGCGGCGGCAAGCGCAAAGGCGGCTTCGCGATCTACCTGGAGCCGTG 179120 Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 |||||| ||||| | ||||| |||||||||| | || || || |||||||| |||| Sbjct 179121 GCACGCAGACATCTTCGAGTTCATCGAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCG 179180 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 | || ||||| || | |||| || ||| | ||||||| ||||| | Sbjct 179181 CACGCGGGACCTCTTCCTGGGGCTGTACATCAACGACTTGTTCATGCGCCGCGTGGACGA 179240 Query 53713 GGACGAGGAGTGGTACCTGATGTG-CCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771 |||| | |||| |||||||| |||| | ||| || ||| | | |||| | Sbjct 179241 AGACGGCGTGTGGAGTCTGATGTGTCCCGCGC-AGTCGCCGGGCTTGTTCGAAGTCTGGG 179299 Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831 | | |||||| ||| | |||| | |||| | || |||| | | | ||| Sbjct 179300 GCGCGGAGTTCGACGCGCTGTACACGCGCTACGAGGCCGAGCAGCGCTTCGTGCGGCAGG 179359 Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891 | |||||||| | | | ||| | || | || | ||| | |||||||| | |||| Sbjct 179360 TGAAGGCGCGCGCGCTCTGGACGGTCATTGTGAACACGCAGATCGAGACGGGCAATCCGT 179419 Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 || || |||||||| || |||| ||| |||||| |||| ||||| |||| Sbjct 179420 ACTTGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCGGAACCTCGGCACCATC 179478 Score = 102 bits (112), Expect = 9e-17 Identities = 313/472 (66%), Gaps = 19/472 (4%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || |||| || || |||||||| | ||| ||||| || || || || || ||||| Sbjct 900249 AGCCCGGGCAGCAGGCCGCGCTTCTTGAGCCAGAAGATCGCGCAAAACGAGCCGCTGAAC 900190 Query 74865 AAGATGCCTTCGACACACGC-AAAGGCGACAAGGCGTTGCGCGAACG-GTGCATCGGAAG 74922 |||||||||||||| | ||| ||| |||| ||||||| ||||| || || | | | Sbjct 900189 AAGATGCCTTCGAC-CGCGCAAAACGCGAGCAGGCGTTCCGCGAGCGAGTTC-GAGCCTG 900132 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 | ||||| | ||||| || || || ||||||||||| || || ||||| || Sbjct 900131 TGATCCACTTGACCGCCCACTCCGCCTTGCGTTTGACCGCCGGCACGTGCTCGATTGCGC 900072 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCT---TGTCAATCATAAGTGAGT 75039 | | | | ||| || |||| | || |||| | |||| |||| | || Sbjct 900071 GCAGCAACCGCAGCTTTTCGTCGGCCTGCTGCGCGAGGTAGGTGTCGATCAGCAAGCTGT 900012 Query 75040 ACGTCTCCGAATGAATCGACTCGTT--GAACGACTGGTACGCGTAGAAAGACCGCGCCTC 75097 |||||||||| || || || | ||| |||| ||||||| || || | | Sbjct 900011 ACGTCTCCGAGTGGATGTTTTCCATCGCAAC--CTGGAACGCGTAAAACTCGCGGACAGC 899954 Query 75098 TGCAATCTGTACATCCTTTGA--AAAATTC--ATGTCGATATTCTCCATGACGATGCCGT 75153 | | ||| ||| || || |||| | || ||| |||||| | |||||||||| Sbjct 899953 GGGCAGCTG--CAT--TTCGACCAAAAAGCGGCTGGCGAGATTCTCGAGCACGATGCCGT 899898 Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTT 75213 | || |||||||| || || || ||||| ||||| |||||| |||| | || Sbjct 899897 CGCTCGCCGCGAAAAACGCGAGCACGTGCTTGATGAAGTGCCGCTCACCGTCCTTCAGCG 899838 Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||||| || | || ||| | | || ||||| |||||| | ||||| || Sbjct 899837 CGTCCCAGTCGTCCAAGTCGGCAGACAGGTCAATTTCCTCGGCGGTCCAAAA 899786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || |||||| |||||| || ||||| ||||| || |||||||| | |||||| | Sbjct 180016 GGGCTGCGCAACAGCCTGCTGGTCGCGCCGATGCCGACGGCGTCGACTTCGCAGATCCTC 180075 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 || ||| |||| ||||||||||||||||| | ||| | | |||||| | | ||| Sbjct 180076 GGGAACTGCGAGTCGTTCGAGCCGTACACGTCGAACGTGTTTACGCGCCGCGTGCTCAGC 180135 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCAC 55624 || ||||| | || ||||||||||| Sbjct 180136 -GGCGAGTTCTGCGTGCTCAACAAGCAC 180162 >seq768 Length=1243675 Score = 122 bits (134), Expect = 1e-22 Identities = 178/246 (72%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 152080 CCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCC 152139 |||||||| || | ||||| || ||||| |||||||| | || ||||| | ||| ||| Sbjct 748776 CCAAACTGACCGCACGGCTCAAGCAGGTTCAGGTTGTTCGTTCCGACGAACTGCTGCGCC 748835 Query 152140 AAATTCACAATCGTGCCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGC--T 152194 | ||||| | ||| |||| | ||| |||| |||||||| || || | ||| | Sbjct 748836 ATGTTCACGACCGT---CTGCGCAATCGATTCTTCGCCGTGGTGGTA-GCTG-CTGACGT 748890 Query 152195 CCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG---TCGTCAGGTTCTTCTTGA 152251 | |||| ||| | || ||||||||||||||||| |||| | |||||||| |||| Sbjct 748891 CTGCGACGTAGCTTGCGAACTGCGCCACCTTCATTTCCGAGCGCACGAGGTTCTTTTTGA 748950 Query 152252 GACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCG 152311 | |||| | ||| |||||||| | || |||| |||||||||| || ||||||| Sbjct 748951 ACGCGCCGTACAGCACTTTGCGCTGCGCCGGCTTCAGCCCGTCCACCATGTTCGGAATCG 749010 Query 152312 AACGCT 152317 | |||| Sbjct 749011 AGCGCT 749016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206957255600