Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq335 210 2e-49
seq768 122 1e-22
>seq335
Length=939964
Score = 210 bits (232), Expect = 2e-49
Identities = 519/779 (67%), Gaps = 14/779 (2%)
Strand=Plus/Plus
Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238
||| ||||| | ||||||||||| | | | |||||| | ||||| |||| |
Sbjct 178707 GCCGCAGTACATGTTCATGCGCGTGTCGGTCGCGATCCACTTGGGCGACTTGCCGCGGAT 178766
Query 53239 CCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCT 53295
||||||||| | ||| ||| |||| || | ||||| ||||| || ||
Sbjct 178767 TTTGGAGACGTACCGGCTGATGTCGAGC---AAGTTTTTCATCCACGCGACGCCGACGCT 178823
Query 53296 GTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGA 53355
||||||||| || ||| | | ||| | || |||||||| ||| || |||| ||
Sbjct 178824 GTTCAACGCCGGGCTGAAGCGGCAACAGCTCTCCAGCTGCTTTCTGCTGCAGATGGCCGA 178883
Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415
||||||||||| ||||| | ||| ||||| |||||||| || ||| ||||| |
Sbjct 178884 CGACTCGATCGAGGGCATTTTCGACACGCTGAAGGAGTGCGCGGTGATCAGCAAGTACGC 178943
Query 53416 GGGTGGTATCGGTATC-CACTGCTCGAACGTCCGTGCGA--ACGGCACACCAATCAAGGG 53472
|| || ||||| || | | | | || |||| |||| | || || ||| |||
Sbjct 178944 TGGCGGGATCGGGCTCGCGATCCAC-AAGATCCGCGCGACGAACGCGTAC--ATCGCGGG 179000
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|||||||| | | | || |||||||| ||||| ||||| |||||| || || ||
Sbjct 179001 CACGAACGGGCGCAGCAACGGGATCGTGCCGATGCTGCGCGTGTTCAACGCGACCGCGCG 179060
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
|||||| ||||||| || || |||||||| || ||||| |||||||| ||||||||
Sbjct 179061 CTACGTCGACCAGGGCGGCGGCAAGCGCAAAGGCGGCTTCGCGATCTACCTGGAGCCGTG 179120
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||||| ||||| | ||||| |||||||||| | || || || |||||||| ||||
Sbjct 179121 GCACGCAGACATCTTCGAGTTCATCGAGCTGCGGCGCAACCACGGCAACGAAGAGTTGCG 179180
Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712
| || ||||| || | |||| || ||| | ||||||| ||||| |
Sbjct 179181 CACGCGGGACCTCTTCCTGGGGCTGTACATCAACGACTTGTTCATGCGCCGCGTGGACGA 179240
Query 53713 GGACGAGGAGTGGTACCTGATGTG-CCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACG 53771
|||| | |||| |||||||| |||| | ||| || ||| | | |||| |
Sbjct 179241 AGACGGCGTGTGGAGTCTGATGTGTCCCGCGC-AGTCGCCGGGCTTGTTCGAAGTCTGGG 179299
Query 53772 GTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGG 53831
| | |||||| ||| | |||| | |||| | || |||| | | | |||
Sbjct 179300 GCGCGGAGTTCGACGCGCTGTACACGCGCTACGAGGCCGAGCAGCGCTTCGTGCGGCAGG 179359
Query 53832 TCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGT 53891
| |||||||| | | | ||| | || | || | ||| | |||||||| | ||||
Sbjct 179360 TGAAGGCGCGCGCGCTCTGGACGGTCATTGTGAACACGCAGATCGAGACGGGCAATCCGT 179419
Query 53892 ACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
|| || |||||||| || |||| ||| |||||| |||| ||||| ||||
Sbjct 179420 ACTTGGTGTACAAGGACGCGTGCAACCGCAAGTCGAACCAGCGGAACCTCGGCACCATC 179478
Score = 102 bits (112), Expect = 9e-17
Identities = 313/472 (66%), Gaps = 19/472 (4%)
Strand=Plus/Minus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
|| || |||| || || |||||||| | ||| ||||| || || || || || |||||
Sbjct 900249 AGCCCGGGCAGCAGGCCGCGCTTCTTGAGCCAGAAGATCGCGCAAAACGAGCCGCTGAAC 900190
Query 74865 AAGATGCCTTCGACACACGC-AAAGGCGACAAGGCGTTGCGCGAACG-GTGCATCGGAAG 74922
|||||||||||||| | ||| ||| |||| ||||||| ||||| || || | | |
Sbjct 900189 AAGATGCCTTCGAC-CGCGCAAAACGCGAGCAGGCGTTCCGCGAGCGAGTTC-GAGCCTG 900132
Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982
| ||||| | ||||| || || || ||||||||||| || || ||||| ||
Sbjct 900131 TGATCCACTTGACCGCCCACTCCGCCTTGCGTTTGACCGCCGGCACGTGCTCGATTGCGC 900072
Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCT---TGTCAATCATAAGTGAGT 75039
| | | | ||| || |||| | || |||| | |||| |||| | ||
Sbjct 900071 GCAGCAACCGCAGCTTTTCGTCGGCCTGCTGCGCGAGGTAGGTGTCGATCAGCAAGCTGT 900012
Query 75040 ACGTCTCCGAATGAATCGACTCGTT--GAACGACTGGTACGCGTAGAAAGACCGCGCCTC 75097
|||||||||| || || || | ||| |||| ||||||| || || | |
Sbjct 900011 ACGTCTCCGAGTGGATGTTTTCCATCGCAAC--CTGGAACGCGTAAAACTCGCGGACAGC 899954
Query 75098 TGCAATCTGTACATCCTTTGA--AAAATTC--ATGTCGATATTCTCCATGACGATGCCGT 75153
| | ||| ||| || || |||| | || ||| |||||| | ||||||||||
Sbjct 899953 GGGCAGCTG--CAT--TTCGACCAAAAAGCGGCTGGCGAGATTCTCGAGCACGATGCCGT 899898
Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTT 75213
| || |||||||| || || || ||||| ||||| |||||| |||| | ||
Sbjct 899897 CGCTCGCCGCGAAAAACGCGAGCACGTGCTTGATGAAGTGCCGCTCACCGTCCTTCAGCG 899838
Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
|||||| || | || ||| | | || ||||| |||||| | ||||| ||
Sbjct 899837 CGTCCCAGTCGTCCAAGTCGGCAGACAGGTCAATTTCCTCGGCGGTCCAAAA 899786
Score = 89.7 bits (98), Expect = 6e-13
Identities = 110/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
|| || |||||| |||||| || ||||| ||||| || |||||||| | |||||| |
Sbjct 180016 GGGCTGCGCAACAGCCTGCTGGTCGCGCCGATGCCGACGGCGTCGACTTCGCAGATCCTC 180075
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596
|| ||| |||| ||||||||||||||||| | ||| | | |||||| | | |||
Sbjct 180076 GGGAACTGCGAGTCGTTCGAGCCGTACACGTCGAACGTGTTTACGCGCCGCGTGCTCAGC 180135
Query 55597 AGGTGAGTTTGTCATGATCAACAAGCAC 55624
|| ||||| | || |||||||||||
Sbjct 180136 -GGCGAGTTCTGCGTGCTCAACAAGCAC 180162
>seq768
Length=1243675
Score = 122 bits (134), Expect = 1e-22
Identities = 178/246 (72%), Gaps = 13/246 (5%)
Strand=Plus/Plus
Query 152080 CCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCC 152139
|||||||| || | ||||| || ||||| |||||||| | || ||||| | ||| |||
Sbjct 748776 CCAAACTGACCGCACGGCTCAAGCAGGTTCAGGTTGTTCGTTCCGACGAACTGCTGCGCC 748835
Query 152140 AAATTCACAATCGTGCCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGC--T 152194
| ||||| | ||| |||| | ||| |||| |||||||| || || | ||| |
Sbjct 748836 ATGTTCACGACCGT---CTGCGCAATCGATTCTTCGCCGTGGTGGTA-GCTG-CTGACGT 748890
Query 152195 CCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG---TCGTCAGGTTCTTCTTGA 152251
| |||| ||| | || ||||||||||||||||| |||| | |||||||| ||||
Sbjct 748891 CTGCGACGTAGCTTGCGAACTGCGCCACCTTCATTTCCGAGCGCACGAGGTTCTTTTTGA 748950
Query 152252 GACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCG 152311
| |||| | ||| |||||||| | || |||| |||||||||| || |||||||
Sbjct 748951 ACGCGCCGTACAGCACTTTGCGCTGCGCCGGCTTCAGCCCGTCCACCATGTTCGGAATCG 749010
Query 152312 AACGCT 152317
| ||||
Sbjct 749011 AGCGCT 749016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547206957255600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |