Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 127 1e-24 seq391 123 2e-23 seq768 107 1e-18 seq558 93.3 3e-14 >seq1 Length=3593316 Score = 127 bits (140), Expect = 1e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| |||||||| | || || ||||| ||||||||||| || Sbjct 1031600 CCACCACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGAC 1031659 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | ||||| | |||||| |||||||| || |||||||| || || || || Sbjct 1031660 AATGTTCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGA 1031719 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCC 34656 | || || |||||| ||| ||||| ||| || | || || || || | ||| Sbjct 1031720 ATACCTTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCGATAGTATC--CGATGGTTCC 1031776 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || ||||||||||| || ||||| || ||||| ||||| Sbjct 1031777 ACTTCCAAGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCAT 1031826 Score = 116 bits (128), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| || | ||| || || || ||||||||||| ||||| || | |||||| | Sbjct 1032524 CGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCA 1032583 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 |||||||| ||||| || || || || ||||| || ||||| || || | ||| || ||| Sbjct 1032584 TCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTG 1032643 Query 34612 TCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||| ||| | || || | ||| || || | |||||||||| || || Sbjct 1032644 TCTTGGAT-TTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAAT 1032702 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || || ||||| |||||||||||||| Sbjct 1032703 GGTTTTACCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| | ||| ||| ||||| ||||| ||||| || | ||| || Sbjct 1032293 AGACGCAATACCAAATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGA 1032352 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||||||||| || ||||| || ||||| || || | |||||| Sbjct 1032353 CCATCTTCTAATTGTTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCT 1032412 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||||| || || | ||||| || || || || | || Sbjct 1032413 TTATC-CTGAATTTTTGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGT 1032471 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || |||||||| ||||| ||||| Sbjct 1032472 GATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 1032510 Score = 109 bits (120), Expect = 3e-19 Identities = 171/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| |||||||| | || ||||||||||| |||||||| || Sbjct 1033255 CCGCCACGTAGACGCAATACCAAATGCAATGTTGATTCCTTTTGAATATTATAATCGGAC 1033314 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| ||||| || || || || || || || || Sbjct 1033315 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGA 1033374 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCC 34656 | || || || ||| ||| ||| | |||||| | || ||||| || | || Sbjct 1033375 ATGCCTTCTTTATCT-TGAATTTTGGCTTTAACATTTTCGATGGTGTC--CGATGGTTCG 1033431 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG-TTGATTG 34714 ||||||| || || |||||||| || || ||||| || || || |||||| ||||||| Sbjct 1033432 ACTTCCAAAGTGATGGTTTTACCAGTCAATGTTTTTACGAAGATTTGCATGATTGATTG 1033490 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||| || |||||||| || ||||| || | || || Sbjct 1031837 AGACGAAGCACCAAATGTAAGGTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGG 1031896 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || ||||| || || || || || | || ||| Sbjct 1031897 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCC 1031956 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGG 34666 || ||| ||||| ||||| | ||||| || || | ||| ||||||| | Sbjct 1031957 TTATCTTGAATCTTGGCTTTTACATTTTCGATTGTATC--CGATGGCTCGACTTCCAAAG 1032014 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||||||||| |||| || || || ||||| ||||| Sbjct 1032015 TGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 1032054 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || |||||||| | || |||||||||||||| ||||| || | |||| Sbjct 1032065 AGACGTAAAACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTT 1032124 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || |||||||| || || || || || || || || | |||||| Sbjct 1032125 CCATCTTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCT 1032184 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| ||| || ||||| | || || || ||| ||||||| || Sbjct 1032185 TTGTCCTGGATTTTGGCTTTTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTA 1032244 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | ||||| || ||||| ||||| Sbjct 1032245 ATAGTTTTACCGGTAAGAGTTTTGACGAAAATTTGCAT 1032282 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| |||||||| | ||| || ||||| || |||||||| || | |||||| | Sbjct 1033038 ACGCAATACCAAATGTAAGGTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCC 1033097 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||| ||||||||||| ||||| || || || || || || || || | || || || Sbjct 1033098 ATCTTCGAGTTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTT 1033157 Query 34611 GTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGT 34667 || ||| ||| | ||| || | || ||||| || | || ||||||| || Sbjct 1033158 ATCCTGGAT-TTTAGCTTTCACATTTTCGATAGTGTC--CGATGGTTCGACTTCCAAAGT 1033214 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || ||||| ||||| Sbjct 1033215 AATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTTGCAT 1033253 >seq391 Length=841353 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | |||||||||| ||| | ||| |||||||||||||| |||||||| Sbjct 250934 CCTCCTCTCAACCGCAACACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGAC 250993 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| || |||||||| || || ||||| ||||| |||||||| || ||||| Sbjct 250994 AATGTCCGCGAATCGTCAAGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGG- 251052 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCTCTCC 34656 | ||||| ||| ||| ||| ||||| ||| | ||| || || || ||||| Sbjct 251053 AATCCCTTCTTTATCCTGAATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCT-- 251110 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | | || |||| || || || ||||| |||||||| ||||| Sbjct 251111 ACTTCGAGAGAAATATTTTTTCCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | ||| ||||| | ||| || || || ||||| || || || Sbjct 730826 CCTCCTCTAAGACGAAGCACTAAATGAATTGTGGATTCTTTCTGGATGTTGTAGTCGGAT 730885 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||| || ||||| ||||| ||||| || | | || || ||||| || Sbjct 730886 AAAGTGCGGTTGTCGTCTAGTTGCTTACCAGCAAAAATAAGTCTTTGCTGATCCGGGGGA 730945 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTT-AACGATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||| || |||||| ||| ||| ||||| | || ||| ||||| || | | |||| Sbjct 730946 ATTCCTTCTTTGTCTTGGAT-TTTGGTTTTGATGGACTCAATAGTGTCATTTGGT-TCCA 731003 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || | || || ||||| |||||||| ||||||||||| Sbjct 731004 CCTCCAGGGTAATGTTCTTCCCTGTTAATGTTTTCACGAAAATCTGCAT 731052 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| || | ||| || || | ||| || || || || || || ||||| Sbjct 251162 CCACCTCTAAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGAC 251221 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||| | ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 251222 AAAGTTCTAGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGA 251281 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||| | || || | ||| ||||| | | || || Sbjct 251282 ATCCCTTCTTTGTC-CTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGAC 251340 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| |||| || ||||| || || |||||||| || || Sbjct 251341 TTCCAAAGATATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 >seq768 Length=1243675 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34475 CGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT 34534 || ||||||| | || |||| |||||| |||| || ||||||||| ||||| || | Sbjct 1130691 CGCCGCCGCCACGCAGCCGCAGCACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGT 1130750 Query 34535 CTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCG 34594 | | || || ||| |||| || | || || |||||||| || | |||||| ||||||| Sbjct 1130751 CCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCG 1130810 Query 34595 GCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTC 34653 |||| | ||||||||||| |||| || | ||| ||| | || ||||| | Sbjct 1130811 GCGGAATGCCCTCCTTGTCCTGGATC-TTAGCTTTGACGCTCTCGATCGTGTCGTTTGGG 1130869 Query 34654 TCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || | ||| || | || || || | ||| ||||| || || ||||| Sbjct 1130870 TCCACCTCAAGGGTGATGTTCTTCCCCGTGAGCGTCTTCACGAAGATTTGCAT 1130922 >seq558 Length=611125 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| || | |||| ||| || |||||||| || || | Sbjct 303940 CCGCCGCGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCG 303881 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || || ||||| ||||||||||| Sbjct 303880 AGCGTGCGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGA 303821 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||| || | ||| ||| | || ||||| | ||||| Sbjct 303820 ATGCCCTCTTTGTCCTGGATC-TTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCAC 303762 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||||| | || || || | || || ||||| |||||||| Sbjct 303761 TTCGAGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724529116026