Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 179 3e-40 seq391 136 3e-27 seq768 109 5e-19 seq558 107 2e-18 >seq1 Length=3593316 Score = 179 bits (198), Expect = 3e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| ||||||| || | || || | ||||||||||| || Sbjct 1031826 ATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATCG 1031767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| |||||| |||||||||||||| || ||||| ||||| Sbjct 1031766 GATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAG 1031707 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||||| || | ||||| |||||||||||||| || ||| | || |||||||| || Sbjct 1031706 CAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGT-CGAACATTGTCCGATTATAA 1031648 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||| || ||||| ||||||||||| ||||| | || ||||| Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGG 1031600 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || |||||||| |||| || || | || ||| | ||||| ||||| || Sbjct 1033482 CATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATC 1033423 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 1033422 GGACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 1033363 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | || || |||||||||||||| || || | |||||||| || Sbjct 1033362 GCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAA 1033303 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || || |||||||| |||||| | || || || || Sbjct 1033302 TATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGGTAT 1033252 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| ||||| || ||||||| | ||||| || || || Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || ||| ||||| || |||||||| || || || || ||||| Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| || ||||||||||| | || | |||||||||||| Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| || ||||||||||| ||| | || ||||| || Sbjct 1032102 ATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGGTAT 1032053 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || || | ||||| | ||||||||||| || Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||| |||||||||||||| || ||||| || || Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| || | ||| |||||||| | ||||| | ||| | || || |||||||| Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGC-CGAACATTGTCGGATTACAA 1032560 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || ||||| | ||| | || ||||| || || ||||| || Sbjct 1032559 CATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATTACGTGGTGGTAT 1032509 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||||||| |||| ||||| | |||||| | ||||| ||||| || Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||| || || |||||||| || ||||| ||||| Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || |||||| | ||||| | ||| | || || ||||| || Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGC-CGAACATTGTCGGATTATAA 1033075 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || |||||||||||||| |||||||| || ||||| || Sbjct 1033074 TATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGGAAT 1033024 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || | || ||| | ||||| || || || Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCG 1031995 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || |||||||| || ||||| || ||||| ||||| Sbjct 1031994 GATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAG 1031935 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| | ||| | ||||||||||| Sbjct 1031934 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAAT 1031875 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || |||||||||||||| | ||| | || ||||| || Sbjct 1031874 ATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGGAAT 1031825 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | || || | || || ||||| || Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||| || ||||| || || ||||| || || Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| |||||||| ||||| || || | || ||||||||| Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAAC 1032331 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| || || |||||||| |||||| | || ||||| || Sbjct 1032330 ATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGGTAT 1032281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| ||||| ||||| || ||||| || | || || ||||| |||||||| || Sbjct 1032865 AGGCATCCCACCAGATCAGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCG 1032806 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || ||||||||||||||||| || || || | ||| | || || || || || Sbjct 1032805 CACCCTATCGGATTACAACATTCAAAAAGAATCTACACTTCATCTCGTATTACGATTACG 1032746 Query 27209 GGGTGGCAT 27217 ||||| || Sbjct 1032745 TGGTGGTAT 1032737 >seq391 Length=841353 Score = 136 bits (150), Expect = 3e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||| |||| || || |||| |||| ||||| || || | Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||| || |||||||| || || || |||||| Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG---ACCGTTTCCGATTAC 27164 ||||| ||||| | || || || ||| | || || |||| || | || |||||| Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGA---TTCGCGGACATTGTCAGATTAC 250984 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || || || ||| |||| ||||| ||| | || || Sbjct 250983 AACATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGG 250934 Score = 118 bits (130), Expect = 9e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||||||||| | || || || |||| | ||||| || ||||| | Sbjct 251616 ATGCAGATATTTGTAAAAACATTAACAGGTAAAAATATTTCGCTTGAGGTAGAACCCACT 251557 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| |||||||| || || ||||| || || || |||||| Sbjct 251556 GACACAATTGAAAATGTGAAAACGAAAATTCAGGATAAGGAAGGAATTCCGCCTGATCAA 251497 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC--GACCGTT-TCCGATTAC 27164 || || ||||| | || || |||||||| ||||| ||| || | || || || ||| Sbjct 251496 CAACGATTAATTTTTGCTGGAAAACAATTAGAAGA---TTCTAGAACTTTGTCAGACTAC 251440 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || || || ||||| ||||| || || Sbjct 251439 AATATCCAGAAAGAATCGACGTTACACTTAGT 251408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || || || |||||||| || | || || || ||| || | ||||| ||||| | Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC--GACCGTT-TCCGATTAC 27164 ||||| ||||| | || || ||||| || ||||| ||| || | || || || ||| Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGA---TTCTAGAACTTTGTCAGACTAC 251212 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || || || || || ||||| || || Sbjct 251211 AATATCCAGAAAGAATCCACATTACACTTAGT 251180 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| ||||| || || |||||||| Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| | || |||| || | ||||| |||||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGCGTTTGCGG-GGTGGCATAACAA 27222 || || || || || || | ||||| || || | || | || |||||| | |||| Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCTTAGAGGAGGTGGCGTTACAA 730815 >seq768 Length=1243675 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| || || ||||| ||||| || | Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| || || || ||||| || ||||| || || || || Sbjct 1130862 GACACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 1130803 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || ||||| ||| | || | | || |||||| Sbjct 1130802 CAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGACTACAAC 1130743 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||||||||| | || ||||| |||| |||| || ||| Sbjct 1130742 ATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGC 1130695 >seq558 Length=611125 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || || |||||| || || || |||||||| || | Sbjct 303714 ATGCAGATATTTGTCAAGACACTCACGGGCAAGAACATAACGCTCGAAGTGGACCCAAAC 303773 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| |||||| || || || |||||||| ||||| || || || || Sbjct 303774 GACACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAAGAGGGCATTCCGCCGGACCAG 303833 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || ||| | || | | || |||||| Sbjct 303834 CAGCGCTTGATCTTTGCGGGGAAGCAGCTCGACGACGGACGCACGCTCGCGGACTACAAC 303893 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | || ||||| |||| |||| || || Sbjct 303894 ATTCAGAAAGAGTCCACTATTCACTTGGTACTGCGACTGCGCGGCGG 303940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911212973440