Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 8e-28
seq391 105 5e-18
seq768 89.7 4e-13
>seq1
Length=3593316
Score = 138 bits (152), Expect = 8e-28
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || ||||||||||| || ||| ||||||| | || ||||| |
Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| |||| | ||| || ||| ||||| |||||||| || |||| || |
Sbjct 1032222 GATACGATCGAAAAT--GTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATC 1032165
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || || ||||||||||| |||||||| || | | | | |||||||||||||
Sbjct 1032164 AGCAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACA 1032105
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| ||||| || || |||||||||||||| ||| | ||||| ||
Sbjct 1032104 ACATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGG 1032056
Score = 125 bits (138), Expect = 5e-24
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||||||||| || ||||| | || || ||| || || | || || ||| ||
Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAAC-CAT 1031769
Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905
|| || || | ||| |||||| |||||| |||||||||||| |||| ||
Sbjct 1031768 CGGATACTATCGAAAAT--GTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGA 1031711
Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965
||||| || || || |||||||||||||||||||| || | || | |||||||||||
Sbjct 1031710 TCAGCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTA 1031651
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||||||| || || |||||||| ||||| | ||||| ||
Sbjct 1031650 TAACATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGG 1031600
Score = 122 bits (134), Expect = 6e-23
Identities = 166/232 (72%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| |||||||| | ||||| ||| || ||| | || || ||| |
Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| |||||||| || || |||||| || ||||| || |||| |
Sbjct 1032450 GA-----TACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAG 1032396
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||| || || |||||||| |||||||| || || | || | || || ||||
Sbjct 1032395 ACCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATT 1032336
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||||||| |||||||||||||| |||||| | ||||| ||
Sbjct 1032335 ACAACATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGG 1032284
Score = 114 bits (126), Expect = 9e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || |||||| | ||||| ||| ||||| | || |||| || || |
Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCG-AACCATC 1033195
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| || ||| ||||| || ||||||||| |||| ||
Sbjct 1033194 GGACACTATCGAAAAT--GTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGAT 1033137
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| || || ||||| || |||||| | || || | || | ||||| |||||
Sbjct 1033136 CAGCAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTAT 1033077
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || |||||||| ||| || |||||||| |||||||| ||||| ||
Sbjct 1033076 AATATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGG 1033027
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || ||||| | ||||| ||| || || | || |||||| || |
Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAAC-CATC 1033423
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| || ||| ||||| || |||||||| |||| ||
Sbjct 1033422 GGACACCATCGAAAAT--GTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGAT 1033365
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| || || ||||| || ||||||||||| || | || | |||||||||||
Sbjct 1033364 CAGCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTAT 1033305
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || ||||| || || ||||||||||| |||||| | ||||||||
Sbjct 1033304 AATATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGG 1033255
Score = 98.7 bits (108), Expect = 7e-16
Identities = 163/232 (70%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || || || || ||||| ||| || || | || ||||| || |
Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGC-CATC 1031996
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| ||||||| || ||| || || || || |||||| |||| |
Sbjct 1031995 G--GAT--ACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAG 1031940
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||| || ||||| || || ||||||||||| || | || | ||| |||||||
Sbjct 1031939 ATCAGCAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATT 1031880
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| || |||||||| ||| || |||||||| | ||| | ||||| ||
Sbjct 1031879 ACAATATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGG 1031828
Score = 98.7 bits (108), Expect = 7e-16
Identities = 164/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| |||||| | ||||| ||| |||||| | || || ||| | |
Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| ||||| ||||| ||||||||||| |||| || |
Sbjct 1032678 GATACCATTGAAAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACC 1032621
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || ||||| || || ||||| | || || | || | ||||| |||||||
Sbjct 1032620 AGCAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACA 1032561
Query 27968 ACATCCAAAAAGA---GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| |||||||| || ||||| ||| | || ||||| || ||||| ||
Sbjct 1032560 ACATTCAAAAAGAATCGA-CACTT--CATCTCGTATTGCGATTACGTGGTGG 1032512
>seq391
Length=841353
Score = 105 bits (116), Expect = 5e-18
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| |||||| | || || ||| |||| | | || || || | |
Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | || || |||| |||| | || || |||||||| ||||| ||
Sbjct 251100 GATACCATTGA-AAGCGTGAAAACGAAAATTCAG--GATAAAGAAGGGATTCCGCCTGAT 251044
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || |||||||||||||| ||||| ||| | ||||| || | ||||| ||||||
Sbjct 251043 CAACAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTAC 250984
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| ||||| || ||||||||| |||| ||||| ||| | || ||
Sbjct 250983 AACATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGG 250934
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| |||||||| | || ||||| ||||| | || || ||| |
Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | | | || ||||| ||||| ||||||||||| |||| ||| |||
Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||| | | |||||||| || || ||| | |||||| | |||| || ||||| ||||||
Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
||||| ||||| ||| | ||||| ||
Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGT 730844
>seq768
Length=1243675
Score = 89.7 bits (98), Expect = 4e-13
Identities = 164/238 (69%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || ||||| || || || ||||| || || |||| || || | |
Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||| || |||| |||||| || || ||||| || || ||||| ||
Sbjct 1130862 GAC-----ACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGG 1130808
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963
| ||||| || | ||||||||||| || || ||||| |||| |||| ||| | | ||
Sbjct 1130807 ACCAGCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCG-CGGAC 1130749
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACG 28021
|||||||||||||| ||| || | || ||||| |||| |||||||||||| ||
Sbjct 1130748 TACAACATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGCGGCG 1130691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355856666389494
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