Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 138 8e-28 seq391 105 5e-18 seq768 89.7 4e-13 >seq1 Length=3593316 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||||||||| || ||| ||||||| | || ||||| | Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| || ||| ||||| |||||||| || |||| || | Sbjct 1032222 GATACGATCGAAAAT--GTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATC 1032165 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || ||||||||||| |||||||| || | | | | ||||||||||||| Sbjct 1032164 AGCAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACA 1032105 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || || |||||||||||||| ||| | ||||| || Sbjct 1032104 ACATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGG 1032056 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| | || || ||| || || | || || ||| || Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAAC-CAT 1031769 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| |||||| |||||| |||||||||||| |||| || Sbjct 1031768 CGGATACTATCGAAAAT--GTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGA 1031711 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| || || || |||||||||||||||||||| || | || | ||||||||||| Sbjct 1031710 TCAGCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTA 1031651 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| || || |||||||| ||||| | ||||| || Sbjct 1031650 TAACATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGG 1031600 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| | ||||| ||| || ||| | || || ||| | Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || || |||||| || ||||| || |||| | Sbjct 1032450 GA-----TACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAG 1032396 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || |||||||| |||||||| || || | || | || || |||| Sbjct 1032395 ACCAGCAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATT 1032336 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||||| |||||||||||||| |||||| | ||||| || Sbjct 1032335 ACAACATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGG 1032284 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| ||||| | || |||| || || | Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCG-AACCATC 1033195 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| || ||||||||| |||| || Sbjct 1033194 GGACACTATCGAAAAT--GTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGAT 1033137 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || || ||||| || |||||| | || || | || | ||||| ||||| Sbjct 1033136 CAGCAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTAT 1033077 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || |||||||| |||||||| ||||| || Sbjct 1033076 AATATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGG 1033027 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| | ||||| ||| || || | || |||||| || | Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAAC-CATC 1033423 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| || |||||||| |||| || Sbjct 1033422 GGACACCATCGAAAAT--GTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGAT 1033365 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || || ||||| || ||||||||||| || | || | ||||||||||| Sbjct 1033364 CAGCAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTAT 1033305 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || || ||||||||||| |||||| | |||||||| Sbjct 1033304 AATATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGG 1033255 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || || || ||||| ||| || || | || ||||| || | Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGC-CATC 1031996 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| ||||||| || ||| || || || || |||||| |||| | Sbjct 1031995 G--GAT--ACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAG 1031940 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || ||||| || || ||||||||||| || | || | ||| ||||||| Sbjct 1031939 ATCAGCAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATT 1031880 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||||| ||| || |||||||| | ||| | ||||| || Sbjct 1031879 ACAATATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGG 1031828 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||| | ||||| ||| |||||| | || || ||| | | Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 1032678 GATACCATTGAAAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACC 1032621 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || ||||| || || ||||| | || || | || | ||||| ||||||| Sbjct 1032620 AGCAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACA 1032561 Query 27968 ACATCCAAAAAGA---GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || ||||| ||| | || ||||| || ||||| || Sbjct 1032560 ACATTCAAAAAGAATCGA-CACTT--CATCTCGTATTGCGATTACGTGGTGG 1032512 >seq391 Length=841353 Score = 105 bits (116), Expect = 5e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||| | || || ||| |||| | | || || || | | Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | || || |||| |||| | || || |||||||| ||||| || Sbjct 251100 GATACCATTGA-AAGCGTGAAAACGAAAATTCAG--GATAAAGAAGGGATTCCGCCTGAT 251044 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||||||||||||| ||||| ||| | ||||| || | ||||| |||||| Sbjct 251043 CAACAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTAC 250984 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| || ||||||||| |||| ||||| ||| | || || Sbjct 250983 AACATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCGGTTGAGAGGAGG 250934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||| | || ||||| ||||| | || || ||| | Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | || ||||| ||||| ||||||||||| |||| ||| ||| Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAG 730933 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | |||||||| || || ||| | |||||| | |||| || ||||| |||||| Sbjct 730932 CAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAAC 730873 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||| ||||| ||| | ||||| || Sbjct 730872 ATCCAGAAAGAATCCACAATTCATTTAGT 730844 >seq768 Length=1243675 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/238 (69%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| || || || ||||| || || |||| || || | | Sbjct 1130922 ATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGACCCAAAC 1130863 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| |||||| || || ||||| || || ||||| || Sbjct 1130862 GAC-----ACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCCGG 1130808 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | ||||| || | ||||||||||| || || ||||| |||| |||| ||| | | || Sbjct 1130807 ACCAGCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCG-CGGAC 1130749 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACG 28021 |||||||||||||| ||| || | || ||||| |||| |||||||||||| || Sbjct 1130748 TACAACATCCAAAAGGAGTCGACGATCCACTTGGTGCTGCGGCTGCGTGGCGGCGGCG 1130691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856666389494