Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq558 149 1e-30 seq768 127 5e-24 seq1 114 3e-20 >seq558 Length=611125 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || | ||||| |||||||||||| || ||||| || ||||| || || Sbjct 303934 CGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTG 303875 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || || ||||| | ||| || ||||| || |||| || Sbjct 303874 CGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCC 303815 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 || |||||||||||||| ||| ||| | ||||| ||||| | || || || ||| Sbjct 303814 TCTTTGTCCTGGATCTTAGCTTTGACGCTCTCGATCGTGTC---GTTTGGGTCCACTTCG 303758 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||| |||||||| ||||| ||||| | |||||| Sbjct 303757 AGCGTTATGTTCTTGCCCGTGAGTGTCTTGACAAATATCTGCAT 303714 >seq768 Length=1243675 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||||||||| || ||||| || || | || || |||| |||||| || Sbjct 1130726 GTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCG 1130785 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || || || || ||||| || |||| || ||||||||||||||||| ||| Sbjct 1130786 GCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTG 1130845 Query 211038 ACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||| | ||||| ||||| | || || ||||| || ||||| |||| |||||||| Sbjct 1130846 ACGCTCTCGATCGTGTC---GTTTGGGTCCACCTCAAGGGTGATGTTCTTCCCCGTGAGC 1130902 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 1130903 GTCTTCACGAAGATTTGCAT 1130922 >seq1 Length=3593316 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||||||||| ||||||| | || | |||||||| | || || || Sbjct 1032313 AGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCTTCTAATTGTTTACC 1032372 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | ||||| ||||| || |||| ||| || || ||||| || ||| || Sbjct 1032373 GGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCCTGAATTTTTGCCTT 1032432 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| |||||||| || ||||| |||||| || | ||||| || || || || | || Sbjct 1032433 CACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTTTTACCAGTCAATGT 1032492 Query 211097 CTTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 1032493 TTTCACGAAAATTTGCAT 1032510 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| ||||| ||||| | | || ||||||||||||| ||||| || Sbjct 1032086 GTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTTCCG 1032145 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | ||||| || || || |||| ||| || ||||||||||| || ||| Sbjct 1032146 GCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCTTTT 1032205 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| || ||||| || || || | || || || || || || ||||| Sbjct 1032206 ACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAGTT 1032265 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 1032266 TTGACGAAAATTTGCAT 1032282 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||||||||| | | || | |||||||||| || || || Sbjct 1031630 GTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCG 1031689 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || || || || |||| ||||| ||||| ||||| ||| ||| Sbjct 1031690 GCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTTGCTTTG 1031749 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| || || || ||| || || | ||||| || || || || | || Sbjct 1031750 ACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTT 1031809 Query 211098 TTTACAAACACCTGCATT 211115 ||||| || | |||||| Sbjct 1031810 TTTACGAAAATTTGCATT 1031827 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| || |||||||| | | || | |||||||||| || || || Sbjct 1033285 GTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCA 1033344 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | ||||| || || || |||| ||||| || || || || || ||| Sbjct 1033345 GCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTTGGCTTTA 1033404 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||||||||| || ||| || || | |||||| || || || || | || Sbjct 1033405 ACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGTT 1033464 Query 211098 TTTACAAACACCTGCAT 211114 ||||| || | ||||| Sbjct 1033465 TTTACGAAGATTTGCAT 1033481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159132366138530