Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq768 111 1e-19 seq558 104 2e-17 seq1 82.4 7e-11 >seq768 Length=1243675 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| ||||| || || || || || || || || ||||||| Sbjct 1130713 CACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATC 1130772 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || ||||| || |||||||||||||| | || | || ||| |||||| Sbjct 1130773 CAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTG 1130832 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | ||| ||| | | ||||| || | ||||| | || Sbjct 1130833 GATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTT 1130892 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| ||||| || || |||||||||||| || Sbjct 1130893 CCCCGTGAGCGTCTTCACGAAGATTTGCATCATT 1130926 >seq558 Length=611125 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || | ||| |||||| || || || || || || || || ||| |||| || Sbjct 303922 ACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCG 303863 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || |||||||| || | ||||||||||| | || | || |||||||||| | Sbjct 303862 AGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGG 303803 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||||| || | | ||| ||| | | ||||| || | ||| || | || Sbjct 303802 ATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTG 303743 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| || || || ||||| || |||||| Sbjct 303742 CCCGTGAGTGTCTTGACAAATATCTGCATC 303713 >seq1 Length=3593316 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || || || | ||| || || ||||||| Sbjct 1032497 ACGAAAATTTG--CATACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTT 1032554 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| | | |||||| | || |||||||||||||| || || || | || Sbjct 1032555 GAATGTTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAAC 1032614 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | |||||||| | || | | |||||||| |||||| |||| | | | | Sbjct 1032615 GTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGG 1032674 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | ||||| |||| || || |||| || |||| ||||| ||||| || | Sbjct 1032675 TATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCT 1032734 Query 39281 GCAT 39284 |||| Sbjct 1032735 GCAT 1032738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || || |||||||||| ||| ||||||| Sbjct 1033012 ACAAAAATTTG--CATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTT 1033069 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 ||||||||||||| | | |||||| | || || || ||||| || ||||| || | | Sbjct 1033070 GTATATTATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATC 1033129 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | ||||| || | || | | ||||| ||| |||||| ||| | | | | | Sbjct 1033130 GTTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAG 1033189 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | || || |||| || || |||| || |||| ||||| || || |||| Sbjct 1033190 TGTCCGATGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTT 1033249 Query 39281 GCAT 39284 |||| Sbjct 1033250 GCAT 1033253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429538679214986