Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq768 111 1e-19
seq558 104 2e-17
seq1 82.4 7e-11
>seq768
Length=1243675
Score = 111 bits (122), Expect = 1e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || | ||| ||| ||||| || || || || || || || || |||||||
Sbjct 1130713 CACCAAGTGGATCGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATC 1130772
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| || || ||||| || |||||||||||||| | || | || ||| ||||||
Sbjct 1130773 CAACTGCTTCCCGGCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTG 1130832
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || ||||| || | | ||| ||| | | ||||| || | ||||| | ||
Sbjct 1130833 GATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTT 1130892
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
||||| ||||| || || |||||||||||| ||
Sbjct 1130893 CCCCGTGAGCGTCTTCACGAAGATTTGCATCATT 1130926
>seq558
Length=611125
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || | ||| |||||| || || || || || || || || ||| |||| ||
Sbjct 303922 ACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCG 303863
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| || |||||||| || | ||||||||||| | || | || |||||||||| |
Sbjct 303862 AGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGG 303803
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || ||||| || | | ||| ||| | | ||||| || | ||| || | ||
Sbjct 303802 ATCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTG 303743
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
||||| || || || ||||| || ||||||
Sbjct 303742 CCCGTGAGTGTCTTGACAAATATCTGCATC 303713
>seq1
Length=3593316
Score = 82.4 bits (90), Expect = 7e-11
Identities = 165/244 (68%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || || || | ||| || || || | ||| || || |||||||
Sbjct 1032497 ACGAAAATTTG--CATACCACCACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTT 1032554
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || || ||||| | | |||||| | || |||||||||||||| || || || | ||
Sbjct 1032555 GAATGTTGTAATCCGACAATGTTCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAAC 1032614
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220
| |||||||| | || | | |||||||| |||||| |||| | | | |
Sbjct 1032615 GTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGG 1032674
Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280
|||| | ||||| |||| || || |||| || |||| ||||| ||||| || |
Sbjct 1032675 TATCCGAGGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAAAGTTTTGACAAAAATCT 1032734
Query 39281 GCAT 39284
||||
Sbjct 1032735 GCAT 1032738
Score = 82.4 bits (90), Expect = 7e-11
Identities = 165/244 (68%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || || || | ||| || || |||||||||| ||| |||||||
Sbjct 1033012 ACAAAAATTTG--CATTCCACCACGTAAACGCAATACCAAATGTAAGGTGGATTCTTTTT 1033069
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
||||||||||||| | | |||||| | || || || ||||| || ||||| || | |
Sbjct 1033070 GTATATTATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATCAATC 1033129
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220
| ||||| || | || | | ||||| ||| |||||| ||| | | | | |
Sbjct 1033130 GTTGCTGATCTGGTGGAATACCTTCTTTATCCTGGATTTTAGCTTTCACATTTTCGATAG 1033189
Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280
| || | || || |||| || || |||| || |||| ||||| || || ||||
Sbjct 1033190 TGTCCGATGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTTACGAAAATTT 1033249
Query 39281 GCAT 39284
||||
Sbjct 1033250 GCAT 1033253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429538679214986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |