Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq391 116 9e-21 seq658 104 6e-17 seq558 102 2e-16 seq724 91.5 4e-13 >seq1 Length=3593316 Score = 161 bits (178), Expect = 2e-34 Identities = 156/198 (79%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||| | ||| ||||| | ||| |||| |||||||| || || || ||| Sbjct 1033057 GTGGATTCTTTTTGTATATTATAATCCGACAATGTTCGGCCATCTTCGAGTTGTTTACCA 1033116 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | |||||| || || || ||||||||||| || || ||||| ||| || || Sbjct 1033117 GCAAAGATCAATCGTTGCTGATCTGGTGGAATACCTTCTTTATCCTGGAT-TTTAGCTTT 1033175 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| |||||| ||||| || | ||| || || || || || || ||||| |||||||| Sbjct 1033176 CACATTTTCGATAGTGTCCGATGGTTCGACTTCCAAAGTAATGGTTTTGCCAGTCAAAGT 1033235 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 1033236 TTTTACGAAAATTTGCAT 1033253 Score = 154 bits (170), Expect = 4e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | || | || ||||||||||||| || ||||||| ||| || Sbjct 1031605 ACGAAGTCGCAATACCAAATGTAATGTCGATTCTTTTTGGATGTTATAATCGGACAATGT 1031664 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | || || || || ||||| | || || || || || |||||||| Sbjct 1031665 TCGACCATCTTCCAATTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACC 1031724 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| |||||| || ||| |||||| || || || | |||||| || | Sbjct 1031725 TTCTTTGTCTTGGAT-TTTTGCTTTGACATTTTCGATAGTATCCGATGGTTCCACTTCCA 1031783 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| || || || ||||| ||||||| ||| | ||||||| Sbjct 1031784 AGGTGATGGTTTTACCGGTCAATGTTTTTACGAAAATTTGCATT 1031827 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | || || || || || || || ||||||||||| | |||||||| | ||| || Sbjct 1032517 ACGTAATCGCAATACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGT 1032576 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| ||||| || |||||||| || | ||||| ||||| || ||||| || Sbjct 1032577 TCGGCCATCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCC 1032636 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||| || ||| ||| ||| ||||| || |||| |||||| || || Sbjct 1032637 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAA 1032696 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || ||||||||||| Sbjct 1032697 TGTAATGGTTTTACCAGTCAAAGTTTT 1032723 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | ||| ||||||| |||||| | |||||||| | || || ||| Sbjct 1033285 GTTGATTCCTTTTGAATATTATAATCGGACAAAGTACGACCATCTTCCAATTGTTTACCA 1033344 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | |||||| || || || ||||| ||||| || ||||| || ||| |||| Sbjct 1033345 GCAAAGATCAATCGTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAAT-TTTGGCTTT 1033403 Query 225637 A-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 | || |||||||||||| || | ||| || || || ||||| || || || ||||| || Sbjct 1033404 AACATTTTCGATGGTGTCCGATGGTTCGACTTCCAAAGTGATGGTTTTACCAGTCAATGT 1033463 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 1033464 TTTTACGAAGATTTGCAT 1033481 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||| | ||||||||||| || || | |||||||| | || || ||| Sbjct 1031858 GTGGATTCTTTTTGAATATTGTAATCGGATAAGGTACGGCCATCTTCCAATTGTTTACCA 1031917 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | ||||| || || || |||||||||||||| ||||| ||||| || Sbjct 1031918 GCGAAAATCAAACGTTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGGCTTTT 1031977 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| || || || | || || || || |||||||| || || || | || Sbjct 1031978 ACATTTTCGATTGTATCCGATGGCTCGACTTCCAAAGTGATCGTTTTACCAGTTAGGGTC 1032037 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 1032038 TTGACGAAAATTTGCAT 1032054 >seq391 Length=841353 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || || | ||| | ||||||||||| |||| |||||| || | ||||||||| Sbjct 251170 AAGTCGAAGCACTAAGTGTAATGTGGATTCTTTCTGGATATTGTAGTCTGACAAAGTTCT 251229 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||| || ||||| || || | ||| |||||||| |||||||| ||||| Sbjct 251230 AGAATCTTCTAACTGTTTTCCAGCAAAAATTAATCGCTGTTGGTCTGGCGGAATCCCTTC 251289 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| || || || ||| ||| || || ||||| || ||| || || || | Sbjct 251290 TTTGTCCTGAATTTTCATCTTTACACTCTCAATAGTGTCGTTGGGTTCGACTTCCAAAGA 251349 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || || || || |||| || | ||| || Sbjct 251350 TATATTTTTTCCTGTTAAGGTCTTTACAAAAATTTGTAT 251388 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||| |||| ||||| |||| ||||| | || ||||| ||||| ||| Sbjct 730856 GTGGATTCTTTCTGGATGTTGTAGTCGGATAAAGTGCGGTTGTCGTCTAGTTGCTTACCA 730915 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || ||||||| ||| || || || ||||| ||||| ||||||||||| || || Sbjct 730916 GCAAAAATAAGTCTTTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGGATTTTGGTTTTG 730975 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 | | || || ||||| | |||||| || | || || |||| || || || ||| Sbjct 730976 ATGGACTCAATAGTGTCATTTGGTTCCACCTCCAGGGTAATGTTCTTCCCTGTTAATGTT 731035 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 731036 TTCACGAAAATCTGCAT 731052 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || | ||| ||||| ||||| | |||||||| | ||| || | | ||| || Sbjct 250952 ACCAGATGCAAAGTTGATTCCTTTTGAATGTTGTAATCTGACAATGTCCGCGAATCGTCA 251011 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || ||||| ||||| || || | || ||||| || |||||||| ||||| || || || Sbjct 251012 AGTTGCTTTCCAGCAAAAATTAACCGCTGTTGATCAGGCGGAATCCCTTCTTTATCCTGA 251071 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || || ||||| ||| ||||| || | || || || | | || | || Sbjct 251072 ATTTTCGTTTTCACGCTTTCAATGGTATCGTTTGGCTCTACTTCGAGAGAAATATTTTTT 251131 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||||| || | |||||| Sbjct 251132 CCTGTCAAAGTTTTTACAAAAATTTGCAT 251160 >seq658 Length=722326 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || || ||||| || |||||||| || || |||||||| Sbjct 225321 GAAAATTTGTCCATCCGTAATTGAAATGACATTGGTCGGGATATAGGCTGATACATCACC 225380 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||||| || || || ||||| | ||||||||| || || ||| ||| Sbjct 225381 AGCTTGTGTTTCGATGACTGGCAAAGCTGTCAATGATCCACCGCCGAATGTTTCATT 225437 >seq558 Length=611125 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||| || | ||| | |||||| ||||| || | ||||| || || | || Sbjct 303934 CGCAGTCGCAGTACCAAGTGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTG 303875 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||||||||| || ||||| | || || ||||| |||||||| || Sbjct 303874 CGTCCGTCGTCGAGCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCC 303815 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||| || |||| ||| ||||| ||||| | ||||| || | Sbjct 303814 TCTTTGTCCTGGATC-TTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAG 303756 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||| || |||||||||| Sbjct 303755 CGTTATGTTCTTGCCCGT 303738 >seq724 Length=282867 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 371049 CTAGATTTTGTTTTCATGAAAAATTATCTATTGCAGGTAATTGTCGTATGTGTTTGGTGG 371108 |||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||| | Sbjct 63216 CTAGATTTTGTTATCATGAACGTTTATCAATTGCCGGTAATTGTCGTATGTGTTTGGTTG 63275 Query 371109 AGGATTTAAAACAAG--TTAAACCTTTAGCCTCCTGTG 371144 | | | ||| ||| |||||||| |||| || |||| Sbjct 63276 A--AGTGGAAAAAAGTCTTAAACCTGTAGCATCATGTG 63311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511000757468