Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1 369 3e-97
seq990 120 3e-22
>seq1
Length=3593316
Score = 369 bits (408), Expect = 3e-97
Identities = 614/878 (70%), Gaps = 8/878 (1%)
Strand=Plus/Minus
Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307
|||||| |||||| ||||||| || || ||||| || ||||| | ||| ||||||||
Sbjct 930126 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAAT 930067
Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367
|| || | ||||||||||||||| ||||| |||| || |||||||||||||| | ||
Sbjct 930066 GATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAAT 930007
Query 4368 GCTACAAGCAATCGGTCAGCTACAA-ATTCTATATACTGGCTCATGAGTTC-GCAGTTAA 4425
| || | || || || || |||| |||| ||||| | | ||| | || ||| || |
Sbjct 930006 TCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCA-TTCA 929949
Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485
| || || ||| || |||| || | || | ||| |||||||| ||| | || || |
Sbjct 929948 TACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCAT 929889
Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAA 4543
| | || || || ||| | | ||||| ||| || || ||| ||||||
Sbjct 929888 CAATAATAATTTCAACAATTCGTTGTGATGATGGACGATT-ACGAA-TATGATGAAACAA 929831
Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603
| ||| |||||||||||||| || ||||| || | ||||| ||| || ||||| ||
Sbjct 929830 AAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGT 929771
Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663
| || ||||||| || | ||||| |||||||| || || |||||||| || |||||
Sbjct 929770 AAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAA 929711
Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723
||||| ||||| || || ||||| || | ||| || | || | | | ||
Sbjct 929710 AAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATC 929651
Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783
|| |||| || ||||| ||||||||||||| || || || | | ||||||
Sbjct 929650 TTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGC 929591
Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| |||| | || |||| | || | ||| || | || | || |||
Sbjct 929590 ATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATA 929531
Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903
|||||| ||||| | |||||| |||||||| |||||||| ||||| || | |||||||
Sbjct 929530 CATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGG 929471
Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963
|| ||| || || | ||| | ||| |||| ||||| || || ||||| ||||| ||
Sbjct 929470 TATTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACTTGC 929411
Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023
|||||||| ||||| ||||| || || || | | ||| | | || | ||| |||||
Sbjct 929410 AGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCA 929351
Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083
|| | ||| | ||| ||| ||||||||||| |||||||| || ||||| |||||
Sbjct 929350 ATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTT 929291
Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121
||||||||| | |||||||||| |||| ||||| ||||
Sbjct 929290 TTTGTACATTGTCCAAATATCATGATATTGAATTGGAA 929253
>seq990
Length=1130841
Score = 120 bits (132), Expect = 3e-22
Identities = 283/425 (67%), Gaps = 8/425 (2%)
Strand=Plus/Minus
Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCT 4622
|||| ||||||||||| ||||||||||||| |||||| || || || | | |||
Sbjct 1099370 TGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCG 1099311
Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682
| ||||| | ||| || || ||| ||| || || ||| || || || || || ||
Sbjct 1099310 CGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCA 1099251
Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742
||||||| || || ||| ||| | | || | ||||||| ||||| |||
Sbjct 1099250 CAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTAT---TAATCCACTTTAAAGCC 1099194
Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTT 4802
|| |||||| | |||| ||| || |||||| ||| | ||| ||| |
Sbjct 1099193 CAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTATTTGT 1099134
Query 4803 TC----AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858
|| | || || ||| | |||| || || || | |||||| ||||||| || ||
Sbjct 1099133 TCTTGCAGATTGGA-TTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075
Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918
|||||| || || | ||||||| |||| || |||| ||| | ||||||| |||
Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTCGAG 1099015
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||| | | | | |||||| || || |||||||| ||||||||||||||||
Sbjct 1099014 GAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCAG 1098955
Query 4979 AACAT 4983
||||
Sbjct 1098954 CACAT 1098950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427042719430226
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |