Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 369 3e-97 seq990 120 3e-22 >seq1 Length=3593316 Score = 369 bits (408), Expect = 3e-97 Identities = 614/878 (70%), Gaps = 8/878 (1%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||||| ||||||| || || ||||| || ||||| | ||| |||||||| Sbjct 930126 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAAT 930067 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || | ||||||||||||||| ||||| |||| || |||||||||||||| | || Sbjct 930066 GATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAAT 930007 Query 4368 GCTACAAGCAATCGGTCAGCTACAA-ATTCTATATACTGGCTCATGAGTTC-GCAGTTAA 4425 | || | || || || || |||| |||| ||||| | | ||| | || ||| || | Sbjct 930006 TCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCA-TTCA 929949 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | || || ||| || |||| || | || | ||| |||||||| ||| | || || | Sbjct 929948 TACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCAT 929889 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAA 4543 | | || || || ||| | | ||||| ||| || || ||| |||||| Sbjct 929888 CAATAATAATTTCAACAATTCGTTGTGATGATGGACGATT-ACGAA-TATGATGAAACAA 929831 Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 | ||| |||||||||||||| || ||||| || | ||||| ||| || ||||| || Sbjct 929830 AAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAGGT 929771 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | || ||||||| || | ||||| |||||||| || || |||||||| || ||||| Sbjct 929770 AAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAAAA 929711 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||||| ||||| || || ||||| || | ||| || | || | | | || Sbjct 929710 AAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCATC 929651 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 || |||| || ||||| ||||||||||||| || || || | | |||||| Sbjct 929650 TTGTGTCCAACGTATAGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTACGTATAGC 929591 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || |||| | || |||| | || | ||| || | || | || ||| Sbjct 929590 ATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATAATGAATA 929531 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||| ||||| | |||||| |||||||| |||||||| ||||| || | ||||||| Sbjct 929530 CATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTGCTTCTGG 929471 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 || ||| || || | ||| | ||| |||| ||||| || || ||||| ||||| || Sbjct 929470 TATTTGTACATCACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCATCACTTGC 929411 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||||| ||||| ||||| || || || | | ||| | | || | ||| ||||| Sbjct 929410 AGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAATTTATTCCA 929351 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | ||| | ||| ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 929350 ATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCTTCAGCTTT 929291 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||||||||| | |||||||||| |||| ||||| |||| Sbjct 929290 TTTGTACATTGTCCAAATATCATGATATTGAATTGGAA 929253 >seq990 Length=1130841 Score = 120 bits (132), Expect = 3e-22 Identities = 283/425 (67%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCT 4622 |||| ||||||||||| ||||||||||||| |||||| || || || | | ||| Sbjct 1099370 TGCATGCCTTCGTCTCTCGAAATCAGTTCGTTACTAAACGTCAAACCAGGAAGCAGACCG 1099311 Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 | ||||| | ||| || || ||| ||| || || ||| || || || || || || Sbjct 1099310 CGTTTTTTCATCCAGAAAATGGCGCAAAAAGAACCGCTAAACAAAATTCCCTCGACTGCA 1099251 Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742 ||||||| || || ||| ||| | | || | ||||||| ||||| ||| Sbjct 1099250 CAGAACGCTAGCAAGCGTTCAGCGATTGAGTTCTCATTAT---TAATCCACTTTAAAGCC 1099194 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTT 4802 || |||||| | |||| ||| || |||||| ||| | ||| ||| | Sbjct 1099193 CAAAGCGCTTTTGATTCAACGGCTTTAATATGGTTTATAGCTCGAAAAATTTTTATTTGT 1099134 Query 4803 TC----AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858 || | || || ||| | |||| || || || | |||||| ||||||| || || Sbjct 1099133 TCTTGCAGATTGGA-TTGCAAATAACAATCAATCAGCAAACTATACGTTTCAGAGTGGAT 1099075 Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 |||||| || || | ||||||| |||| || |||| ||| | ||||||| ||| Sbjct 1099074 ATTTTCCATCGCCAACTGAAATGCGTAGAAATCTCTAATTTCAGGGACTTGAAACTCGAG 1099015 Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||| | | | | |||||| || || |||||||| |||||||||||||||| Sbjct 1099014 GAAAAAACGACGTCCAATGTTTTCTAAAACGATTCCGTCACTTGCTGCAAAAAACGCCAG 1098955 Query 4979 AACAT 4983 |||| Sbjct 1098954 CACAT 1098950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427042719430226