Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 107 4e-18 seq768 95.1 3e-14 seq558 84.2 5e-11 >seq1 Length=3593316 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || |||||||| ||||||||||| | || |||| |||||||| Sbjct 1032530 ACGAGATGAAGTGTCGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCATCTTCA 1032589 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || ||||| || | | |||||||| | | |||||||| || ||||| Sbjct 1032590 AGCTGTTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGTGGAATTCCTTCTTTGTCTTGG 1032649 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| |||||| | || | | | || || || ||||| | ||||| ||||| Sbjct 1032650 ATTTTAGCCTTGACATTTTCAATGGTATCCGAGGGTTCCACTTCCAATGTAATGGTTTTA 1032709 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||| || || || | |||||| Sbjct 1032710 CCAGTCAAAGTTTTGACAAAAATCTGCAT 1032738 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCC 151965 || || || ||||| ||||||||||||| |||||||| |||||||| | ||||| | Sbjct 1032086 GTCGATTCCTTTTGAATGTTGTAATCGGACAAAGTTCTTCCATCTTCCAATTGCTTT--C 1032143 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 |||| ||||| | | ||||| || | | ||||| || || || || ||||| || Sbjct 1032144 CGGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCTT 1032203 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | ||| | || | | || || ||| ||||| | ||||||||||| || || |||| Sbjct 1032204 TTACATTTTCGATCGTATCAGATGGCTCGACTTCCAATGTAATAGTTTTACCGGTAAGAG 1032263 Query 152086 TCTTCACGAAGACCTGCAT 152104 | || ||||| | ||||| Sbjct 1032264 TTTTGACGAAAATTTGCAT 1032282 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| ||||||||||||||||||||||| | ||| || | |||||||||| Sbjct 1032307 ATGCAAAGTTGACTCTTTTTGGATGTTGTAATCCGATAATGTACGACCATCTTCTAATTG 1032366 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| ||||| | | |||||||| | | ||||| || || || |||||||| Sbjct 1032367 TTTACCGGCAAAGATCAAACGTTGCTGGTCTGGTGGAATTCCCTCTTTATCCTGAATTTT 1032426 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | || ||| | || | | || || || || || | || || ||||| || || Sbjct 1032427 TGCCTTCACATTTTCGATTGTATCAGATGGTTCAACGTCTAATGTGATGGTTTTACCAGT 1032486 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| | ||||| Sbjct 1032487 CAATGTTTTCACGAAAATTTGCAT 1032510 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||||||||| ||||||| || |||| |||||||| | ||| ||| Sbjct 1031630 GTCGATTCTTTTTGGATGTTATAATCGGACAATGTTCGACCATCTTCCAATTGTTTTCCG 1031689 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | |||||| || | | || ||||| || ||||| |||||| |||| Sbjct 1031690 GCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTTGCTTTG 1031749 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || ||||| | || || ||||| || || | || Sbjct 1031750 ACATTTTCGATAGTATCCGATGGTTCCACTTCCAAGGTGATGGTTTTACCGGTCAATGTT 1031809 Query 152088 TTCACGAAGACCTGCATT 152105 || ||||| | |||||| Sbjct 1031810 TTTACGAAAATTTGCATT 1031827 >seq768 Length=1243675 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| |||||||||||||| || || | || | ||| || || | |||||| Sbjct 1130726 GTCGACTCCTTTTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCATCCAACTGCTTCCCG 1130785 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || | ||||||||||| || || || ||||| || || || || |||| Sbjct 1130786 GCAAAAATCAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTG 1130845 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || |||| | |||| || || ||||| || || | || |||||||| ||| Sbjct 1130846 ACGCTCTCGATCGTGTCGTTTGGGTCCACCTCAAGGGTGATGTTCTTCCCCGTGAGCGTC 1130905 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||||| ||||| Sbjct 1130906 TTCACGAAGATTTGCAT 1130922 >seq558 Length=611125 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||| ||| |||||||| || |||||||| || || | || | || || || | Sbjct 303920 CAAG-TGAATAGTGGACTCTTTCTGAATGTTGTAGTCCGCGAGCGTGCGTCCGTCGTCGA 303862 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| || ||||| | | ||||||||||| || || || || || || || | Sbjct 303861 GCTGCTTCCCCGCAAAGATCAAGCGCTGCTGGTCCGGCGGAATGCCCTCTTTGTCCTGGA 303802 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| |||| | |||| || ||||| || || || | |||| Sbjct 303801 TCTTAGCTTTGACGCTCTCGATCGTGTCGTTTGGGTCCACTTCGAGCGTTATGTTCTTGC 303742 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| || || | |||||| Sbjct 303741 CCGTGAGTGTCTTGACAAATATCTGCAT 303714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153801256439062