Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq1 152 4e-32
seq391 113 4e-20
>seq1
Length=3593316
Score = 152 bits (168), Expect = 4e-32
Identities = 178/239 (74%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
|||||||||||| || ||||| |||||||| |||||||| ||| ||||| ||||||
Sbjct 1031827 AATGCAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATC 1031768
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
||| || | | | || ||| |||||| ||||||||||| |||| |||||
Sbjct 1031767 GGATACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 1031708
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| | | || | ||| || ||||||||||||||| | ||| || ||||||||||
Sbjct 1031707 GCAGCGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAA 1031648
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAATAA 111336
|| ||||||||||| ||| ||||||| || ||||| || || ||||| || |||| ||
Sbjct 1031647 CATCCAAAAAGAATCGACATTACATTTGGTATTGCGACTTCGTGGTGGAAACTAAACAA 1031589
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || ||||| ||||| |||||||||||||| ||||| |||||
Sbjct 1033253 ATGCAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCG 1033194
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| || | | | || ||| ||||| || |||||||| |||| |||||
Sbjct 1033193 GACACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAG 1033134
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | || | ||| || |||||| | |||||| ||| || | |||||||||
Sbjct 1033133 CAACGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAAT 1033074
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||||||||||||| || ||||||| || |||||| | || |||||
Sbjct 1033073 ATACAAAAAGAATCCACCTTACATTTGGTATTGCGTTTACGTGGTGG 1033027
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| || || ||||| ||||| || |||||||| || ||||| |||||
Sbjct 1033481 ATGCAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCG 1033422
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | | | | || ||| |||||| || ||||||||| |||| |||||
Sbjct 1033421 GACACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 1033362
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | || | ||| || ||||||||||||||| | ||| || |||||||||||
Sbjct 1033361 CAACGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAAT 1033302
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| ||||| ||| | ||||| || |||||||| || || ||
Sbjct 1033301 ATTCAAAAGGAATCAACATTGCATTTGGTATTGCGTCTACGTGGCGG 1033255
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| |||||||| | ||||| ||||| ||||| ||||| || ||
Sbjct 1032282 ATGCAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCT 1032223
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | | | | |||||| ||||| |||||||| || ||||| |||||
Sbjct 1032222 GATACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAG 1032163
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | || | ||| || || |||||||||||| | |||| || ||||||| ||
Sbjct 1032162 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAAC 1032103
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| ||||| ||| | ||||| || || ||||| || |||||
Sbjct 1032102 ATTCAAAAGGAATCGACATTGCATTTGGTTTTACGTCTCCGTGGTGG 1032056
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||||||||| ||||| || ||||||||||| ||||| |||||||
Sbjct 1032738 ATGCAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCG 1032679
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| | || || ||||| ||||||||||| |||| || ||
Sbjct 1032678 GATACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAG 1032619
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| || |||||||| | |||||| ||| || | ||||| ||
Sbjct 1032618 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAAC 1032559
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| ||||| ||| | || ||||| | || |||||
Sbjct 1032558 ATTCAAAAAGAATCGACACTTCATCTCGTATTGCGATTACGTGGTGG 1032512
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| ||||| || | || || ||||| || || ||||| || ||
Sbjct 1032054 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCG 1031995
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | | | | |||||| || ||| || || ||||| |||| |||||
Sbjct 1031994 GATACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAG 1031935
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
||| | | |||| || || ||||||||||||||| || | ||||||| |||
Sbjct 1031934 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAAT 1031875
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||||||||| || ||||||| ||| | ||||| || |||||
Sbjct 1031874 ATTCAAAAAGAATCCACCTTACATTTGGTGCTTCGTCTCCGTGGTGG 1031828
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||||||||| || ||||| ||||| || |||||||| || | || |||||
Sbjct 1032510 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCT 1032451
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | | | | || || ||||||| || ||||| || |||| || ||
Sbjct 1032450 GATACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAG 1032391
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277
||| | | || | ||| || |||||||| |||||| || | | ||| | ||||| |
Sbjct 1032390 CAACGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTAT--CGGATTACA 1032333
Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
| || |||||||| || || | ||||| || |||||||| || |||||
Sbjct 1032332 ACATCCAAAAAGAGTCAACTTTGCATTTGGTATTGCGTCTACGTGGTGG 1032284
>seq391
Length=841353
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|| ||||||||||| || || || || || |||| || | ||||| ||||||| |
Sbjct 251388 ATACAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAAC 251329
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| || ||| ||||| |||||| ||||||||||| |||| || |||
Sbjct 251328 GACACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAA 251269
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| | | |||| ||| || ||||| || |||||||||| |||| || | || || |||
Sbjct 251268 CAGCGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAGACTACAAT 251209
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || |||||||| ||| |||| |||||| | || || | |||||
Sbjct 251208 ATCCAGAAAGAATCCACATTACACTTAGTGCTTCGACTTAGAGGTGG 251162
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||| || ||||| || || || || | ||||||| |||| |||||| |
Sbjct 731052 ATGCAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAAT 730993
Query 111160 GATTCTGTTG-GCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| || ||| | | ||||| |||| | ||||||||||| ||||| |||||
Sbjct 730992 GACACTATTGAGTCCATCAAAACCAAAA-TCCAAGACAAAGAAGGAATTCCCCCGGATCA 730934
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||||| ||||||| ||| || || ||| | || || ||| | |||| || ||
Sbjct 730933 GCAAAGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAA 730874
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317
|| || |||||||| ||| | ||||||||| | |||||
Sbjct 730873 CATCCAGAAAGAATCCACAATTCATTTAGTGCTTCGTCT 730835
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||||||||| ||||| ||||| || |||| ||| | | ||| || || | |
Sbjct 251160 ATGCAAATTTTTGTAAAAACTTTGACAGGAAAAAATATTTCTCTCGAAGTAGAGCCAAAC 251101
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| | ||| || ||| |||||| || |||||||| |||| ||||||
Sbjct 251100 GATACCATTGAAAGCGTGAAAACGAAAATTCAGGATAAAGAAGGGATTCCGCCTGATCAA 251041
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| || | |||| ||| || || ||| | || ||||| || || | ||||| ||
Sbjct 251040 CAGCGGTTAATTTTTGCTGGAAAGCAACTTGACGATTCGCGGACATTGTCAGATTACAAC 250981
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111314
|| ||||| ||||| || | ||| | ||||||||
Sbjct 250980 ATTCAAAAGGAATCAACTTTGCATCTGGTGTTGCG 250946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421804403830672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |