Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 158 3e-33 seq768 131 4e-25 seq558 116 9e-21 seq391 114 3e-20 >seq1 Length=3593316 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || ||||| |||||| | || |||||| || || Sbjct 1031823 CAAATTTTCGTAAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAACCATCGGAT 1031764 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||| || || ||||||||||| || || || || ||||| Sbjct 1031763 ACTATCGAAAATGTCAAAGCAAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAGCAG 1031704 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| | |||||||| | || | ||||||||||| || Sbjct 1031703 CGTTTGATCTTTGCCGGAAAACAATTGGAAGATGGTCGAACATTGTCCGATTATAACATC 1031644 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||| | ||| | || ||| |||| Sbjct 1031643 CAAAAAGAATCGACATTACATTTGGTATTGCGACT 1031609 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || || ||||| || || | || || || || || Sbjct 1032279 CAAATTTTCGTCAAAACTCTTACCGGTAAAACTATTACATTGGAAGTCGAGCCATCTGAT 1032220 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || || ||||||||||| ||||| || || || |||||| Sbjct 1032219 ACGATCGAAAATGTAAAAGCCAAAATCCAGGACAAAGAGGGAATTCCCCCAGATCAGCAA 1032160 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| |||||||| || | ||||||||||| ||| | ||||||| ||| | Sbjct 1032159 CGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGAAGAACTTTGTCCGATTACAACATT 1032100 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| ||||| ||| ||||| | ||||| Sbjct 1032099 CAAAAGGAATCGACATTGCATTTGGTTTT 1032071 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || || ||||| || || | || |||||| ||| || Sbjct 1032735 CAGATTTTTGTCAAAACTTTGACTGGTAAAACCATTACATTGGAAGTGGAACCCTCGGAT 1032676 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || || || |||||||||||||| || || ||||||||| Sbjct 1032675 ACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGACCAGCAA 1032616 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||||| |||||||| | || | | ||||| ||| | Sbjct 1032615 CGTTTGATTTTCGCTGGCAAACAGCTTGAAGATGGCCGAACATTGTCGGATTACAACATT 1032556 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||||||||| ||||| ||||| || ||| || Sbjct 1032555 CAAAAAGAATCGACACTTCATCTCGTATTGCGA 1032523 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| | || || ||||| ||||| | || || ||| || || Sbjct 1032507 CAAATTTTCGTGAAAACATTGACTGGTAAAACCATCACATTAGACGTTGAACCATCTGAT 1032448 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||| |||||||| ||||| ||||| || || ||||||||| Sbjct 1032447 ACAATCGAAAATGTGAAGGCAAAAATTCAGGATAAAGAGGGAATTCCACCAGACCAGCAA 1032388 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | |||||||| | || | | ||||| ||| || Sbjct 1032387 CGTTTGATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACATTATCGGATTACAACATC 1032328 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| ||||| ||||| | || ||| Sbjct 1032327 CAAAAAGAGTCAACTTTGCATTTGGTATTG 1032298 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| ||||| | || || ||| || ||| Sbjct 1033478 CAAATCTTCGTAAAAACATTGACTGGTAAAACCATCACTTTGGAAGTCGAACCATCGGAC 1033419 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| || ||||| || |||||||| || || || || |||||| Sbjct 1033418 ACCATCGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAGCAA 1033359 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||| | |||||||| | ||| | |||||||||| | Sbjct 1033358 CGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGTCCGATTATAATATT 1033299 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||||||| ||||| | || ||| Sbjct 1033298 CAAAAGGAATCAACATTGCATTTGGTATTG 1033269 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || ||||| || || | || || ||| || ||| Sbjct 1033250 CAAATTTTCGTAAAAACTTTGACTGGCAAAACCATTACTTTGGAAGTCGAACCATCGGAC 1033191 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || || ||||| |||||||| || || || || |||||| Sbjct 1033190 ACTATCGAAAATGTGAAAGCTAAAATCCAGGATAAAGAAGGTATTCCACCAGATCAGCAA 1033131 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||| ||||||||||| | || | | |||||||| | Sbjct 1033130 CGATTGATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACATTGTCGGATTATAATATA 1033071 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || | ||| | || ||| Sbjct 1033070 CAAAAAGAATCCACCTTACATTTGGTATTG 1033041 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||||||||| | || || || || || Sbjct 1032051 CAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACTTTGGAAGTCGAGCCATCGGAT 1031992 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| |||||||| || || ||||| || || || || |||||| Sbjct 1031991 ACAATCGAAAATGTAAAAGCCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAGCAA 1031932 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| | |||||||| | || | ||||||| || | Sbjct 1031931 CGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGCCGTACCTTATCCGATTACAATATT 1031872 Query 178104 CAAAAAGAATCAAC 178117 ||||||||||| || Sbjct 1031871 CAAAAAGAATCCAC 1031858 >seq768 Length=1243675 Score = 131 bits (144), Expect = 4e-25 Identities = 152/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 177917 AATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAG 177976 |||| | ||||| |||||||| || ||||| || || | |||||||| |||||||| Sbjct 1130926 AATGATGCAAATCTTCGTGAAGACGCTCACGGGGAAGAACATCACCCTTGAGGTGGA--- 1130870 Query 177977 CTCA---GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 | || ||||| ||||||| ||||||| ||||| |||||||| || || || || || Sbjct 1130869 CCCAAACGACACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCGCC 1130810 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 ||||||||| || || || || ||||| || ||| | || || || | || || || || Sbjct 1130809 GGACCAGCAGCGTCTGATTTTTGCCGGGAAGCAGTTGGATGACGGGCGCACGCTCGCGGA 1130750 Query 178094 TTATAACGTCCAAAAAGAATCAAC 178117 || ||| ||||||| || || || Sbjct 1130749 CTACAACATCCAAAAGGAGTCGAC 1130726 >seq558 Length=611125 Score = 116 bits (128), Expect = 9e-21 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 || ||| | || || || || || || ||||| || || | || || ||||| ||||| Sbjct 303708 AACATGATGCAGATATTTGTCAAGACACTCACGGGCAAGAACATAACGCTCGAAGTGGA- 303766 Query 177975 AGCTCA---GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 | || ||||| ||||||| ||||||| ||||| ||||||||||| || || || Sbjct 303767 --CCCAAACGACACGATCGAGAGCGTCAAAGCTAAGATCCAGGACAAAGAGGGCATTCCG 303824 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 ||||||||||| || | ||||| || || || |||||||| || ||| | || || || Sbjct 303825 CCGGACCAGCAGCGCTTGATCTTTGCGGGGAAGCAGCTCGACGACGGACGCACGCTCGCG 303884 Query 178092 GATTATAACGTCCAAAAAGAATCAAC 178117 || || ||| | || ||||| || || Sbjct 303885 GACTACAACATTCAGAAAGAGTCCAC 303910 >seq391 Length=841353 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| | ||||| || | || ||||| ||||||||| ||| Sbjct 731049 CAGATTTTCGTGAAAACATTAACAGGGAAGAACATTACCCTGGAGGTGGAACCAAATGAC 730990 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||| | ||||| || || || |||||||||||||| || ||||| |||||| Sbjct 730989 ACTATTGAGTCCATCAAAACCAAAATCCAAGACAAAGAAGGAATTCCCCCGGATCAGCAA 730930 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || || || || || || | ||| | |||| || ||| || Sbjct 730929 AGACTTATTTTTGCTGGTAAGCAACTAGACGACAACCGCACTTTATCCGACTACAACATC 730870 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || |||||||| ||| | ||| Sbjct 730869 CAGAAAGAATCCACAATTCAT 730849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | |||||||||| || | | || || ||| | ||| Sbjct 251385 CAAATTTTTGTAAAGACCTTAACAGGAAAAAATATATCTTTGGAAGTCGAACCCAACGAC 251326 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||| || || || ||||||||||||||||| || || || ||||| || Sbjct 251325 ACTATTGAGAGTGTAAAGATGAAAATTCAGGACAAAGAAGGGATTCCGCCAGACCAACAG 251266 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || ||||||||| | |||||| || ||| | | || || || || Sbjct 251265 CGATTAATTTTTGCTGGAAAACAGTTAGAAGATTCTAGAACTTTGTCAGACTACAATATC 251206 Query 178104 CAAAAAGAATCAACA 178118 || |||||||| ||| Sbjct 251205 CAGAAAGAATCCACA 251191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710811050468