Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3127 156 9e-33 seq1175 120 6e-22 seq38 95.1 3e-14 seq232 84.2 5e-11 >seq3127 Length=15394 Score = 156 bits (172), Expect = 9e-33 Identities = 263/377 (70%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||| || ||||||||||| || ||||| ||| |||||||||||||||| ||| | || Sbjct 1905 TCAGGCTTCAACATCTGAGCTATATGGCTTAGTACAAGAAATTCCTCAAAGAGAGACAAC 1846 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 ||||||||| ||| | || || | || ||||| |||| || || |||||| | Sbjct 1845 TCCGTTTTACCCTAGATCTCCATACGCGGTCGCAAAGTTATATGCATATTGGATTACTGT 1786 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAG 61267 ||| || || ||||| |||||||| | || |||||| || ||||||||| || Sbjct 1785 AAACTATCGTGAGTCATATGGAATCTATGCTTGTAACGGTATACTTTTCAATCATGAATC 1726 Query 61268 TCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTT 61327 ||| | | ||| | ||||| || || |||||||| || |||| ||||||| Sbjct 1725 TCCACGTCGTGGTGAAACTTTTGTAACACGAAAAATTACTCGCGCAATTGCTAATATTTC 1666 Query 61328 TAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATA 61387 | || | ||| | ||| | ||| |||| || || |||||| | | |||||||| | Sbjct 1665 CCAAGGAATTGAACAGTGCCTTTATTTAGGTAATATGGACTCTTTACGTGATTGGGGCCA 1606 Query 61388 TGCGGAAGATTAT-ATCG-AGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGAC 61445 || |||||||| ||| | || | ||| ||||| | ||||||||| || || || Sbjct 1605 CGCAAAAGATTATGTTCGCATGCAA--TGGATGATGCTCCAACAAGATCAGCCTGAAGAT 1548 Query 61446 TACGTTATTGCGACTGG 61462 | || ||||| ||||| Sbjct 1547 TTTGTCATTGCTACTGG 1531 Score = 86.0 bits (94), Expect = 1e-11 Identities = 217/325 (67%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 150684 AGGTTCGTCGGCATTACTGACAC-GAAATTACAACCGAATTGTTTTCTGTAGGCGTCGCA 150742 ||||||||||||||||| | || | ||| || ||| ||||| | |||| || || Sbjct 669 AGGTTCGTCGGCATTAC-GCTACGGTAATCACGACCATATTGTCGATTATAGGATTCACA 727 Query 150743 CATTTCGATTCCGGCTATCTTCGCTATCGCGTATGGTTTGTTAGTAGGTTCGAGAAACCC 150802 || || || ||||| || ||||| || || || |||| || || | ||| |||| ||| Sbjct 728 CAATTTCATGCCGGCAATTTTCGCAATAGCATAAGGTTCATTTGTTGCTTCAAGAATCCC 787 Query 150803 GGTCATCAGGTATTCTTCTTTGATGGG--GTTTGGGGATTCTTTCGGGTATATACAGCTA 150860 |||| ||| ||||| || || |||| | || ||| || || |||||||| Sbjct 788 AGTCAACAGTGCCGATTCTTGTATAGGCTGTTTTGCGA--GTTTAGGATAAATACAGCTC 845 Query 150861 CTCCCGAGGAAAACGAGTTTTTTCACA----TTGAATGTTTTAGAAGCGTGGATAACGTT 150916 || | ||| | | ||||| |||| | |||| | | |||||| | || Sbjct 846 GAACCTAAGAAGAGTAATTTTTGCACACCCGCTAAATG----CGCGGAGTGGATGATATT 901 Query 150917 CGTTTGAATCATCAGGTTGTCACGAATAAAATCACCACCAAAAGAATTGTTTGCATGAAT 150976 ||| ||||| || || ||| ||| || ||| || | | | ||| || |||||||| Sbjct 902 ACTTTCGATCATTAGATTCTCATAAATGAACTCAGCAGGATAGGTATTATTAGCATGAAT 961 Query 150977 ACCCCCTACTTTGGCAGCGGCGAGA 151001 ||||| ||||| || || || ||| Sbjct 962 TCCCCCGACTTTTGCTGCTGCAAGA 986 >seq1175 Length=89672 Score = 120 bits (132), Expect = 6e-22 Identities = 268/395 (68%), Gaps = 12/395 (3%) Strand=Plus/Minus Query 281557 TGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTA 281616 ||||||||||| | ||||| || || ||| || || ||||||||| | ||||| | Sbjct 45360 TGGGATTATAATTAGGAATTTTTGTCATCCAGCCAGTCCCAATACCATCAGCTCCATTAA 45301 Query 281617 CCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCAT 281676 | || | | || ||||| || | ||| | | || ||||| || | | |||||||| Sbjct 45300 CTAATACCATTGGTATAATGGGAATATAGAAAACAGGCTCAATCTTCTGATGATCATCAT 45241 Query 281677 ACAAATACTTCAG--AAG-GTTATCATCTGTATCGACGA--AAACCTG-TCGCGTCTTAG 281730 || || ||| || ||| || ||||| | ||| || || || | || | | | | | Sbjct 45240 ACTCATGCTTGAGTAAAGCGTCATCATGTTTATGGAAGATGAATCTTGCTAGTGAACT-G 45182 Query 281731 GGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCG 281790 | ||| ||||| | ||||| |||| || |||||| || || ||| ||| | Sbjct 45181 AGCCGAGT---GTGAA--TGTACCTACCACTAGCAGAGTCTTTCCCCCCTTGCGCCCTGG 45127 Query 281791 ACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAG 281850 || |||||||| |||| |||| || ||||||||||| || || | | ||||| Sbjct 45126 TACCGAACTGACCGATGGGCATCAACAGATTGATGTTATTGCTGCCAACAAAGTTCTGAG 45067 Query 281851 CCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGG 281910 | || |||| ||| || | || || | ||| || || || ||||| |||||| | Sbjct 45066 CGAGATTGATGATAGTTGTCGTCAGTGACATCTCTCCATGATGGTAGGCAGAGTGTTCAG 45007 Query 281911 CAACATAACCACTGAACTGTGCTACCTTCACGTCT 281945 ||||| ||||| || |||||||||||||| ||| Sbjct 45006 CAACAGAACCAGACAATTGTGCTACCTTCACTTCT 44972 >seq38 Length=2624962 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| | ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 2553495 GCCTGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2553554 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2553555 CCCACGTTGGGC 2553566 >seq232 Length=1000471 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 695491 TTGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 695550 Query 165768 GCCCCACGATGGGC 165781 |||||||| |||| Sbjct 695551 GCCCCACGTCGGGC 695564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057770220227840