Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq3116 266 1e-66 seq3597 246 1e-60 seq3161 221 5e-53 seq2778 199 2e-46 seq2992 161 4e-35 seq3413 154 6e-33 seq2827 105 3e-18 seq3621 102 3e-17 seq3821 100 1e-16 seq3764 98.7 4e-16 seq2954 98.7 4e-16 seq3556 87.8 7e-13 >seq3116 Length=1110 Score = 266 bits (294), Expect = 1e-66 Identities = 258/329 (78%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 60784 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 60843 |||||| ||||| |||||||| | ||| | ||| |||||||| |||||||| || ||||| Sbjct 493 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTCTCGTTACGTTCGACCAT 552 Query 60844 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 60903 || |||||||| || || ||||| ||||||||||| ||| | ||||| || | ||| Sbjct 553 GGCAAGCTCTTTGGCCGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 612 Query 60904 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 60963 ||||||||| ||||||||||||||||| ||||||||||||| |||||| || |||| | Sbjct 613 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTTAACGAAACCAAACTCCGC 672 Query 60964 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 61023 ||| ||||| |||||||||| |||||| || |||||||| |||| || ||||| || Sbjct 673 AATCCGTTCGGTAATCCACGTTGCAAAACGCTTACCTACGGCAAGGAATTCATGTAGCTC 732 Query 61024 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGCG 61083 || |||| | || || |||| |||||| ||||| || ||||| ||||||||| | Sbjct 733 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 792 Query 61084 TTGACTGGTCATGATGACCTCCT-TATTT 61111 ||| | ||||| | || |||| ||||| Sbjct 793 TTGTGTTGTCAT-TTTACGTCCTCTATTT 820 >seq3597 Length=1779 Score = 246 bits (272), Expect = 1e-60 Identities = 200/238 (84%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 61093 CATGAT-GACCTCCTTATTTGTTTAGTTTATAACCGCCAGTTAGTAGCTGGCGGTCGGGT 61151 |||||| | ||||||||| | |||||| || | ||||||||| ||||| | ||||| Sbjct 1515 CATGATAGGCCTCCTTATGTATTTAGTCTACGGCTACCAGTTAGTTGCTGGTAGCCGGGT 1574 Query 61152 GTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTGTATTACGCC 61211 ||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||| Sbjct 1575 GTCAACTGAGCCACATAAGACGCTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCC 1634 Query 61212 TCTCCACCCGACCTTTGTACGGATGTAACTATGCCAAATTGCAGGCATAAAAAAGCCGCA 61271 |||||||||| |||| ||||||| | || ||| || | ||||||||||||||||| Sbjct 1635 TCTCCACCCGGCCTT----CGGATGTGATTACGCCGTTTTACGGGCATAAAAAAGCCGCA 1690 Query 61272 AAGCTATCGGGTGCGG-AGACCGCTTATTTGTTCAGTGCGGTCAGTAT-GCGATAGCT 61327 |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| Sbjct 1691 TGGCTATCGGGTGCGGAAGACCGCTTATGTATTCAGTGCGGTCAGTATCCCGATAGCT 1748 >seq3161 Length=3056 Score = 221 bits (244), Expect = 5e-53 Identities = 195/238 (82%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 61093 CATGAT-GACCTCCTTATTTGTTTAGTTTATAACCGCCAGTTAGTAGCTGGCGGTCGGGT 61151 |||||| | ||||||| | |||||||||| | | ||||||||||||||| | | ||| Sbjct 2794 CATGATCGGCCTCCTTTGTAGTTTAGTTTA--ATCACCAGTTAGTAGCTGGTGACCAGGT 2851 Query 61152 GTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTGTATTACGCC 61211 |||||||||| | | ||| | ||| ||||||||||||||||||||| |||||||||||| Sbjct 2852 GTCAACTGAGTCTACAAAGCAACTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCC 2911 Query 61212 TCTCCACCCGACCTTTGTACGGATGTAACTATGCCAAATTGCAGGCATAAAAAAGCCGCA 61271 |||||||||| |||| ||||||| | || ||| |||| ||||||||||||||||| Sbjct 2912 TCTCCACCCGGCCTT----CGGATGTGATTACGCCGTTTTGCGGGCATAAAAAAGCCGCA 2967 Query 61272 AAGCTATCGGGTGCGG-AGACCGCTTATTTGTTCAGTGCGGTCAGTAT-GCGATAGCT 61327 |||||||||||||| |||||||| | ||||||||| |||||||| |||||||| Sbjct 2968 TGGCTATCGGGTGCGGTTGACCGCTTTGTAGTTCAGTGCTGTCAGTATCCCGATAGCT 3025 >seq2778 Length=2936 Score = 199 bits (220), Expect = 2e-46 Identities = 287/402 (71%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 26170 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 26229 || |||| |||||| | ||||||||||| || ||| |||| | || ||||| ||||| Sbjct 2140 GCCTACCCTGATGGCGGCGGTATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 2081 Query 26230 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 26289 ||||| || | ||||| |||||| | || | |||| | || | ||| Sbjct 2080 AAGCCGGTAGTGAAGGGCATAAAGCTGACCGCCGAGCAGTGCGCAAAGATTGATGCCGCA 2021 Query 26290 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 26349 || | | |||||||| | |||||||| ||| | ||||||||||| || || | Sbjct 2020 GAACAGCAAAAGGCGCTCGATTGGGTGGACCGTAACGTTAAAGTGCCGCTCACTGAGACT 1961 Query 26350 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 26409 ||||||| || || || ||||| ||||||| || || ||||||||||| || ||| | Sbjct 1960 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 1901 Query 26410 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 26468 || ||||| ||| | | |||| |||||||| |||| | |||||||| ||| ||| Sbjct 1900 TCAACGTTCTACCG-CAAATTGAATGCAGGCGATCTGATTGGTGCCTGTAAAGAGATTAA 1842 Query 26469 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 26528 | ||||| |||||| || | ||| |||||||| || |||||||||||||||| || Sbjct 1841 GCGCTGGATCTGGGACGGCGGGAAAGATTGCCGTATCCGCGCAAACAACTGTTACGGGCA 1782 Query 26529 GGTATCCCGTCGTGACCAGGAGAGCGCGCTGGCGTGCTGGGG 26570 | || || |||||||||||| || ||| | |||||||| Sbjct 1781 GATAGAGCGGCGTGACCAGGAGTCCGAGCTTTCTTGCTGGGG 1740 >seq2992 Length=1942 Score = 161 bits (178), Expect = 4e-35 Identities = 227/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 26867 CCGTGCCGTTTCACGGCAACTCTCTTTATGTAGTTAACCATAATGGCGAACCATACGTTC 26926 |||| | || |||||| || ||| ||| | || ||||| || |||||||| || | Sbjct 406 CCGTATCATTCCACGGCGACAATCTCTATCTCGTCAACCACAACGGCGAACCCTATACCC 465 Query 26927 CCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAA 26986 | ||||| || | || | | |||||| ||| ||| || | ||| | | Sbjct 466 CGATGAAGCCCATTGTAGAAAGCATGGGGATGGATTGGATGGGGCAATATTTAAAGCTTA 525 Query 26987 GACAGCGTTTTGCGTCAACTATAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACAAC 27046 ||| | ||| ||||||||| ||||||| ||||||||| | || ||||| || | Sbjct 526 AACATAGATTTAGCTCAACTATAGAGGAAATCTCTATGGTTGCCGGAGACGGGAAGCAGC 585 Query 27047 GCAATATGGTGTCCATGCCACTTCGAAAACTTGCCGGCTGGCTACAAACCATTAATCCCA 27106 |||| ||||| | | | || || ||||| || || || ||||| || ||||| | || || Sbjct 586 GCAAAATGGTCTGCCTCCCTCTCCGAAAGCTCGCAGGGTGGCTCCAGACCATCAGTCTCA 645 Query 27107 ACAAAGTAAAACCCGAAATCCGCGATAAGGTCATCCGGTATCAGGAAGAGTGCGACGATG 27166 ||||||| || || ||||||||||| ||||| || |||||| | ||||||||||||| Sbjct 646 ACAAAGTTAATCCTGAAATCCGCGACAAGGTGATGAAATATCAGAACGAGTGCGACGATG 705 Query 27167 TTCTTTACGAGTACTGGAC 27185 | || |||||||| ||||| Sbjct 706 TGCTCTACGAGTATTGGAC 724 >seq3413 Length=1126 Score = 154 bits (170), Expect = 6e-33 Identities = 355/535 (66%), Gaps = 50/535 (9%) Strand=Plus/Plus Query 6750 TTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCGAGAC 6809 |||||| || ||||| ||||| || |||| || || |||||||| || || || | | Sbjct 626 TTTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGC 685 Query 6810 GGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCC 6869 | ||||||||||||| | || || || | ||| || |||| || || ||||||||| Sbjct 686 GTGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGGCT 745 Query 6870 CCGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACT 6929 |||| ||| | || | | || |||| | | Sbjct 746 ---------------------GGGTATTGC---GCTCAC------ACTCGCCCATGTATT 775 Query 6930 CGGTAACG-CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCA 6988 |||| || ||| | || || || || || || |||||||||| ||| || | | | Sbjct 776 CGGTGACTACAG-TGGGGTGTTTGCGATCTTTACGGTAAATCCTGCAAGTCGATGCGCCC 834 Query 6989 TTGTCCTGCTCAAAG------TCCATGCCATCAAACTGCTGGTTTTCGTTGATGATGCGG 7042 | ||||| || || ||||||||||| || ||| | | |||||| ||||| || Sbjct 835 TCGTCCTTATCGTAGCTGAATTCCATGCCATCGAATTGCGGATGTTCGTTAATGATCCGC 894 Query 7043 GACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAA 7102 | ||| ||||| || || || |||||||| || ||| || | ||||| ||||||||| Sbjct 895 GCCCATCCATCGACACCGACAACCGGAACAATCCCGCCCT---TGTCAGGAAAGGCGTAA 951 Query 7103 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAAC 7162 |||||||| |||||||| || || |||||||||||||| ||||| || | ||| | || Sbjct 952 ATTTCTTTTGTCCACGGGTTGAGTCCGTACTGGTTGGCAACGATAAGTAGGGCGGTAAAT 1011 Query 7163 TGCGCATCGCTGGC---ATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTTCC 7219 ||| | || || | | | || || || ||||| | || ||| | || | ||| Sbjct 1012 TGCTCGTCCGTGACGTTACCCCCCTTGAACGCCGTATTCTTCAGCGTGCTCATTAATTC- 1070 Query 7220 TGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTG 7274 ||| | | | ||||||| | ||||||||||| || ||||||| |||| Sbjct 1071 ----GGT-GCCTGGTGCCATGCCAAGGCGTTCAGCCAGTTTTCCAGCCATTGTTG 1120 >seq2827 Length=1523 Score = 105 bits (116), Expect = 3e-18 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 13201 CTATTCACTATTGGAAATCTTAAGAAATGGAACAAACAAGTTACAGCAAACTATCACAGC 13260 ||||| ||| |||| || || ||||||| |||| |||||||||| ||||| | Sbjct 1099 CTATTACCTAAAGGAATACT-AACAAATGGATATTACAAACTACAGCAAACCGTCACAAC 1157 Query 13261 GAGAAATTGATCGCGCTGAAACTGATTTACTCATCAACCTGTCAACGCTTACCCAGCGCG 13320 |||||||||||| |||||||| || || ||||||| ||| || | || ||| |||| Sbjct 1158 AAGAAATTGATCGTGCTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCA 1217 Query 13321 GTCTGGCAAAGATGATTGGCTGTCATGAATCGAAGATAAGCAGAACAGACTGGAGGTTTA 13380 | ||| || | || ||||| |||||||| || || | || |||||| | |||| Sbjct 1218 AGTTCGCAGAGTTTGCCGGGTGTCACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTA 1277 Query 13381 TAGCTTCGGTCTTGTGTG 13398 | || | |||||||||| Sbjct 1278 TCGCCACTGTCTTGTGTG 1295 >seq3621 Length=2627 Score = 102 bits (112), Expect = 3e-17 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 13201 CTATTCACTATTGGAAATCTTAAGAAATGGAACAAACAAGTTACAGCAAACTATCACAGC 13260 ||||| ||| |||| || || ||||||| |||| |||||||||| ||||| | Sbjct 341 CTATTACCTAAAGGAATACT-AACAAATGGATATTACAAACTACAGCAAACCGTCACAAC 283 Query 13261 GAGAAATTGATCGCGCTGAAACTGATTTACTCATCAACCTGTCAACGCTTACCCAGCGCG 13320 |||||||||||| |||||||| || || ||||||| ||| || | || ||| |||| Sbjct 282 AAGAAATTGATCGTGCTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCA 223 Query 13321 GTCTGGCAAAGATGATTGGCTGTCATGAATCGAAGATAAGCAGAACAGACTGGAGGTTTA 13380 | || || | || ||||| |||||||| || || | || |||||| | |||| Sbjct 222 AGTTCGCGGAGTTTGCCGGGTGTCACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTA 163 Query 13381 TAGCTTCGGTCTTGTGTG 13398 | || | |||||||||| Sbjct 162 TCGCCACTGTCTTGTGTG 145 >seq3821 Length=1769 Score = 100 bits (110), Expect = 1e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 18919 GTGTATATATTCGAAGGCGAACAAGGTAAGCGAGGCAGCATTATTGTCGTCGCTCAGTTG 18978 || |||||||| || |||||||| |||||||| | |||||||| ||||||||||| | Sbjct 1306 GTTTATATATTTGAGGGCGAACAGGGTAAGCGCGATAGCATTATCGTCGTCGCTCAACTC 1365 Query 18979 TCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 19026 | || || |||||||| || || ||||||||||||| ||| || ||| Sbjct 1366 TGCCCTGAGTTCACCGCCCGTCTGGTTGACCGCTGGCAAGAGCTGGAA 1413 >seq3764 Length=2321 Score = 98.7 bits (108), Expect = 4e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21120 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21179 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 2198 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 2139 Query 21180 CCAGCAAGGGCCACCATAT 21198 ||| || |||||||||||| Sbjct 2138 CCAACAGGGGCCACCATAT 2120 >seq2954 Length=2725 Score = 98.7 bits (108), Expect = 4e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 13225 AAATGGAACAAACAAGTTACAGCAAACTATCACAGCGAGAAATTGATCGCGCTGAAACTG 13284 ||||||| |||| |||||||||| ||||| | |||||||||||| |||||||| | Sbjct 1350 AAATGGATATTACAAACTACAGCAAACCGTCACAACAAGAAATTGATCGTGCTGAAACGG 1409 Query 13285 ATTTACTCATCAACCTGTCAACGCTTACCCAGCGCGGTCTGGCAAAGATGATTGGCTGTC 13344 | || ||||||| ||| || | || ||| |||| | || || | || |||| Sbjct 1410 ACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTGCCGGGTGTC 1469 Query 13345 ATGAATCGAAGATAAGCAGAACAGACTGGAGGTTTATAGCTTCGGTCTTGTGTG 13398 | |||||||| || || | || |||||| | ||||| || | |||||||||| Sbjct 1470 ACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTATCGCCACTGTCTTGTGTG 1523 >seq3556 Length=1052 Score = 87.8 bits (96), Expect = 7e-13 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 18919 GTGTATATATTCGAAGGCGAACAAGGTAAGCGAGGCAGCATTATTGTCGTCGCTCAGTTG 18978 || ||||| || || || ||||| || ||||| | |||||||| ||||||||||| | Sbjct 227 GTTTATATGTTTGAGGGAGAACAGGGGAAGCGCGATAGCATTATCGTCGTCGCTCAACTC 168 Query 18979 TCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAA 19026 | || || |||||||| || || ||||||||||||| ||| || ||| Sbjct 167 TGCCCTGAGTTCACCGCCCGTCTGGTTGACCGCTGGCAAGAGCTGGAA 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197213106880512