Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq3413 163 9e-36 seq3690 102 3e-17 >seq3413 Length=1126 Score = 163 bits (180), Expect = 9e-36 Identities = 357/535 (67%), Gaps = 50/535 (9%) Strand=Plus/Plus Query 32270 TTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGAC 32329 |||||| || ||||| ||||| || |||| || || |||||||| || || |||| | Sbjct 626 TTTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGC 685 Query 32330 GGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCC 32389 | ||||||||||||| | || || || | ||| || |||| || || ||||||||| Sbjct 686 GTGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGGCT 745 Query 32390 CCGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATT 32449 || ||| | || | |||| |||| ||| Sbjct 746 GGGT-ATTGCGCTCACAC-----------------TCGC------------CCATGTATT 775 Query 32450 CGGTAACG-CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTACAGGATTCA 32508 |||| || ||| | || || || || || || |||||||||| ||| || | | | Sbjct 776 CGGTGACTACAG-TGGGGTGTTTGCGATCTTTACGGTAAATCCTGCAAGTCGATGCGCCC 834 Query 32509 TTGTCCTGCTCAAAG------TCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGG 32562 | ||||| || || ||||||||||| || ||| | | ||| || ||||| || Sbjct 835 TCGTCCTTATCGTAGCTGAATTCCATGCCATCGAATTGCGGATGTTCGTTAATGATCCGC 894 Query 32563 GACCAGCCATCAACGCCCACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAA 32622 | ||| ||||| || || || |||||||| || || || | ||||||||||||||| Sbjct 895 GCCCATCCATCGACACCGACAACCGGAACAATCCCGCCCT---TGTCAGGAAAGGCGTAA 951 Query 32623 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCAACGATCAGTAATGCGATGAAC 32682 |||||||| |||||||| || || |||||||||||||||||||| |||| ||| | || Sbjct 952 ATTTCTTTTGTCCACGGGTTGAGTCCGTACTGGTTGGCAACGATAAGTAGGGCGGTAAAT 1011 Query 32683 TGCGCATCGCTGGC---ATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTTCC 32739 ||| | || || | | | || || || ||||| | || ||| | || | ||| Sbjct 1012 TGCTCGTCCGTGACGTTACCCCCCTTGAACGCCGTATTCTTCAGCGTGCTCATTAATTC- 1070 Query 32740 TGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTG 32794 ||| | | | ||||||| | ||||||||||| || ||||||| |||| Sbjct 1071 ----GGT-GCCTGGTGCCATGCCAAGGCGTTCAGCCAGTTTTCCAGCCATTGTTG 1120 >seq3690 Length=4460 Score = 102 bits (112), Expect = 3e-17 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 21944 GCATTTAACTATATTGTGAGGCTTGCATAATGGCATTCAGAATG---AGTGAACAACCAC 22000 || ||||| ||||| |||||||||||||||||| || ||| |||||| | | Sbjct 2830 GCTTTTAATTATATAGTGAGGCTTGCATAATGGATTTTGAAATATCCAGTGAAGCAAAA- 2888 Query 22001 GGACCATAAAAATTTATAATCTGCTGGCCGGAACTAATGAATTTATTGGTGAAGGTGACG 22060 ||||| || ||||||||||| | || | || || ||||||||||||| || || | Sbjct 2889 --ACCATTAAGATTTATAATCTCCACGCTGATACAAAGGAATTTATTGGTGCTGGAGATG 2946 Query 22061 CATATATTCCGCCTCATACCGGTCTGCCTGCAAACAGTACCGATATTGCACCGCCAGATA 22120 | |||||||| ||||| || || | || ||| | |||| | ||||| ||||| | Sbjct 2947 CTTATATTCCACCTCACACAGGGTTACCGGCACTCTGTACAACAACCGCACCACCAGAAA 3006 Query 22121 TTCCGGCTGGCTTTGTGGCTGTTTTCAACAGTG-ATGAGGCATCGTGGCATCTCGTTGAA 22179 | | || | | ||| |||||||| ||| ||| | || ||| | || ||| Sbjct 3007 TCCTGGTCGACCATGTTGCTGTTTTTAAC-GTGCAAGAACAGATTTGGGTACAGGTAGAA 3065 Query 22180 GACCATCGGGGTAAAACCGTCTATGAC 22206 || ||||| || |||| ||||||||| Sbjct 3066 GATCATCGAGGAGAAACTGTCTATGAC 3092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155077492404224