Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq3727 883 0.0 seq2988 96.9 3e-16 seq3934 95.1 9e-16 >seq3727 Length=10360 Score = 883 bits (978), Expect = 0.0 Identities = 947/1249 (76%), Gaps = 5/1249 (0%) Strand=Plus/Plus Query 2710 TCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTA 2769 |||| ||||| ||||||||||||| ||| || ||||| || ||||||||||| || ||| Sbjct 72 TCCAGGTAATCCGCCCACCACTGCACCATCAACCGCCGTTCGTCCAAATGCTCAGATGTA 131 Query 2770 TGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCG 2829 || || || | ||||||||||| |||||||| | |||||| || || | ||||||||| Sbjct 132 TGAATGTACTCGGCACGTACATTGTTACGCTCAGTGTGGCTTAGCTGGCGTTCTATCGCG 191 Query 2830 TCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGC 2889 ||||| ||||| || || |||||||||| || || || ||||| ||||| || || || Sbjct 192 TCATCGCTCCACAAGCCAGACTCCCCCATTGCCCCGCGTGCCATTGTCCTGAAACCGTGG 251 Query 2890 CCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTTT 2949 || |||||||| |||||||| || ||||||||||| ||||| || | || ||||||||| Sbjct 252 CCGCACACCTCAGTTTTAGTGTCGTAGCCCATCGCCCGCAACGCATTATTGACCGTGTTT 311 Query 2950 TCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTATCACCACTA 3009 || ||||| ||||| | || ||||| || || || || || || | || ||| Sbjct 312 TCGCTCATCACCTTTTCAGGATCGTGATCGCCGGGGAACAGACACTTATTGTTCCCGCTA 371 Query 3010 ATCTGCTTTAACTGGTTTAATAAAATCATCGCCTGTCGACTAAGCGGAACGATATGTTCC 3069 | ||||| | | | | | |||||| || || ||||| |||||||| || Sbjct 372 AGTGTCTTTAGCCTTTCCAGCAGCGCAAGCGCCTGACGGCTCAGCGGCACGATATGCTCT 431 Query 3070 TCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCTTTAATTTCTTCTCGCTTTGCA 3129 || ||||||||||||| ||||| || || || ||||| | || || |||| || Sbjct 432 TCCCTCATCTTCATGCCACGGTAAGAGTATTTAACCCCTTTTAGCTCCTCACGCTGCGCC 491 Query 3130 GGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCCCAACGTGCGAAACGTAATTCA 3189 || |||||||| || || |||||||| || ||| ||| ||||||||||||| ||| Sbjct 492 GGAATACGCCAGCAAGCATTGTCGAAGTCAAACTCACACCATTGTGCGAAACGTAACTCA 551 Query 3190 CTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCAATCCGTGTCATTACACGGCCA 3249 ||||| || ||||| || || || | || | ||||| ||||| ||||| | |||||| Sbjct 552 CTGGAGCGTACAAAGGTCAGTAACGTGAGTTCTACCGCGATCCGGGTCATCAGTCGGCCA 611 Query 3250 CGATATGCAGCAAGACGTGCAAGAAACTCAGGGAATCGGCTAGAAGGTAAAGCAGGGTAA 3309 ||||| | | |||| || || || ||||| ||||| || | ||||| | || | | Sbjct 612 CGATAGGAATCAAGGCGAGCGAGGAACTCGGGGAAGCGATGCGGCGGTAAGGTGGGATGA 671 Query 3310 TGTCGCGCTTTGGTTGTCGATAGCGCACCAGCCATATCGCTGGCTGGATTTGAGTCGATG 3369 || || |||||||| |||| ||||| |||||||| ||||||| || || |||||| Sbjct 672 TGGCGTGCTTTGGTAGTCGTCAGCGCCCCAGCCATGTCGCTGGAAGGGTTACTGTCGATA 731 Query 3370 TAATCGTTCTGTACGGCATAACGCATAATGGCTGTGACGCGCTGTTGCAGGCGCTGAGCG 3429 |||||| || || ||||||||||| ||||| || | |||||||||||||| || || Sbjct 732 ATATCGTTTTGCACCGCATAACGCATGATGGCCGTAATACGCTGTTGCAGGCGTTGGGCA 791 Query 3430 ACATCGTGTTTGCCACTGGCATCAACTTTTTTAATCGGGGCTAACAGGTGGCTGGTTTTA 3489 || ||||||||||| || |||||||| ||||||||||||||||||||||| |||||| Sbjct 792 ACGTCGTGTTTGCCGCTAGCATCAACCGCTTTAATCGGGGCTAACAGGTGGCCGGTTTTC 851 Query 3490 AGCTGCCGAATGTCGGACGAACCGATATGAGGGAATATATAAAGCTCAAGATAGCGAAGA 3549 |||| || || || | || ||||| | |||||| ||||| | |||||||| ||| | Sbjct 852 AGCTTACGGATATCAGTCGCGCCGATCTCAGGGAAAATATAGACCTCAAGATTGCGTATC 911 Query 3550 ACGCGCGATCGATGGTCTTCACTCCAGCGCTTGTTACTGGCATGCCATTCTCGGGCGATA 3609 ||||| || |||| ||| | |||||||||||| ||||| ||||| | || ||||| Sbjct 912 ACGCGATCGCGGTGGTATTCGCCCCAGCGCTTGTTGCTGGCGTGCCACTGGCGCGCGATG 971 Query 3610 GCTTCAAAAGTATA--TGCCCCCGAATTCTCGGCCCGAGCTTCTTTTTGTACGACTTTTG 3667 | ||||||||||| | || || || || || | |||||||| || || |||||| Sbjct 972 GTCTCAAAAGTATAGGTTCCGGCGGAT--TCAGCTTGTGCTTCTTTATGCTCGGCTTTTG 1029 Query 3668 GGTCTATGCCCTGTACTAAAAGCTTTTTAGCTTCATCGCGTTTTGCTCTTGCCTGAGCAA 3727 |||| || ||||| ||||| |||||||| || ||||||||||||| | ||| | ||| | Sbjct 1030 GGTCGATACCCTGCACTAACAGCTTTTTGGCCTCATCGCGTTTTGTGCGTGCATCAGCCA 1089 Query 3728 GCGTCACAGTAGGCCAAACACCAAACGCAAGACGATCCTCTTTTTTGTCAGAGGGACGTC 3787 | | || || ||||| ||||||||||| || || || ||||| ||||| || || | Sbjct 1090 GGCTAACTGTCGGCCATACACCAAACGCGAGCCGGTCTTCTTTCTTGTCGCTCGGCCGCC 1149 Query 3788 TGTATTTCATGCGCCAGTATTTGGAACCTTTGGCCGAAACCTCAAGATACAAACCACCAC 3847 ||| ||||||||||||||||| || ||||||| | | ||||||||||| || || | Sbjct 1150 GGTACTTCATGCGCCAGTATTTCGATCCTTTGGGGGTGATCTCAAGATACAGGCCGCCGC 1209 Query 3848 CATCGGCCATTTTGTAGGTTTTGTCTTTTGGCTTTGCGGTCTCGACCTGTCTGGCGTTGA 3907 |||| |||||||| |||| ||||||||||||||| || |||||||| || | |||||||| Sbjct 1210 CATCTGCCATTTTATAGGCTTTGTCTTTTGGCTTGGCAGTCTCGACTTGGCGGGCGTTGA 1269 Query 3908 GCTTCA-TTTGGGGGCACATTTCTAATCGAAGTTAAGATGCCCCCAATT 3955 |||||| ||||||||||||||| ||||||||| || ||||||||||| Sbjct 1270 GCTTCATTTTGGGGGCACATTTGCAATCGAAGTGGAGGTGCCCCCAATT 1318 >seq2988 Length=1532 Score = 96.9 bits (106), Expect = 3e-16 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 8353 GGGTTGTAGCCATGATGGCAGCCTCCTGTGAATAGCAAATAACGCTATCGCCGGAGTTCT 8412 |||| || |||||||| || ||||| ||||| | ||||| | || ||||| | Sbjct 1349 GGGTAGTGGCCATGATAGCGACCTCCAAGGAATAACTGGACTCGCTACCACCTGAGTTGT 1290 Query 8413 CACGCTCG-ATGGCGATAGCCCAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGC 8471 |||||| | || | |||||||||||||||| | || ||||||||| | |||||||| Sbjct 1289 GACGCTCATAGGGTGGTAGCCCAGACGGGGGTCACAA-ACCGGCTTCCTTGAATACCGGC 1231 Query 8472 CAGCCCGGAGGCTGCCCCGCCTGAGCTACCAT 8503 || || ||| |||||||||||||| ||||| Sbjct 1230 CACCCATAAGGGTGCCCCGCCTGAGCCACCAT 1199 >seq3934 Length=1156 Score = 95.1 bits (104), Expect = 9e-16 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 8353 GGGTTGTAGCCATGATGGCAGCCTCCTGTGAATAGCAAATAACGCTATCGCCGGAGTTCT 8412 |||| ||||||||||| ||| ||||| ||||||| ||||| | | ||||| Sbjct 510 GGGTAGTAGCCATGATAGCAACCTCCAAGGAATAGCTGGACTCGCTACCACTAGAGTTAC 569 Query 8413 CACGCTCGATGGCGATAGCCCAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGCC 8472 |||||| | || | |||||||||||||||| || | ||||||||| ||||||| ||| Sbjct 570 TACGCTC-AGGGTGGTAGCCCAGACGGGGGT-AGTAAACCGGCTTCCTTGGATACCAGCC 627 Query 8473 AGCCCGGAGGCTGCCCCGCCTGAGCTACCAT 8503 | || || |||||| ||||||| ||||| Sbjct 628 ACCCTTACGGGTGCCCCACCTGAGCCACCAT 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37079944677376