Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq676 105 6e-18 seq10 86.0 5e-12 >seq676 Length=265522 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| |||||| | ||||| |||||||||| ||||| ||| ||| || | Sbjct 178558 AAAAATGCAGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGGC 178499 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | | ||| ||| || ||||| || || | ||| ||| Sbjct 178498 CTCTGATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCAGA 178439 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 || || ||||| ||||| || || |||||| ||||||| ||| | | ||||| Sbjct 178438 CCAGCAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGATTA 178379 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||||||||||||||||||| |||| | ||| | || ||||| Sbjct 178378 CAACATCCAGAAGGAATCTACTCTTCACTTGGTCCTTCGACTTCGTGGAGG 178328 >seq10 Length=2352850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| ||||||| | || ||||| ||||| || |||| || || | Sbjct 821030 AATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 821089 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||| ||||| || || || || | || |||||| Sbjct 821090 TGACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCA 821149 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | |||||||| || ||||||||||||||| | |||| || |||| ||||| Sbjct 821150 ACAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAA 821209 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||| |||||||| || ||| |||| Sbjct 821210 CATCCAGAAAGAATCTACACTCCACTTGGT 821239 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| || | || ||| |||||| | || ||||| || || |||||| ||||| Sbjct 820668 GATAAAGAGGGAATTCCTCCAGACCAACAACGTCTCATCTTCGCTGGTAAACAATTGGAA 820727 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| | | || ||||| || ||||||||||| ||||| ||| |||| || Sbjct 820728 GATGGCAGGACTCTCTCAGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTA 820787 Query 29175 CGATTACGAGGAGG 29188 || | ||||| || Sbjct 820788 CGTCTTCGAGGTGG 820801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428315285671040