Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq3842 136 8e-28 seq2852 91.5 3e-14 seq3204 80.6 6e-11 >seq3842 Length=22882 Score = 136 bits (150), Expect = 8e-28 Identities = 315/469 (67%), Gaps = 12/469 (3%) Strand=Plus/Plus Query 12948 ATTATATTATCGCCGAGCTGGTTATTCCGCCGGAGGTG--GGCGGTTTCTGGATGCGTGA 13005 || ||||||| |||| || ||| || || || | || || || |||||||| ||||| Sbjct 22047 ATCATATTATTGCCGTGCAGGTGATCCC--CGAAAATGAAGGGGGATTCTGGATACGTGA 22104 Query 13006 GCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGCTA 13065 | ||||||| |||| || || | || ||||| || || ||| ||||||| ||| Sbjct 22105 AATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTTGCCAACTGCGCCGAAACCTA 22164 Query 13066 TAAGCCAGCCCTTGCCG-AAGGCTCAGGACGTTGGCAGACCTGTCGCATGGTCATCATCG 13124 |||||| || |||| | ||||| |||||| |||||| |||||| | | || | Sbjct 22165 TAAGCC-GCAATTGCAGGAAGGCAGCGGACGTATTCAGACCGTGCGCATGATTTTGATTG 22223 Query 13125 TCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGG 13184 || ||| | |||| ||| | ||||| | | |||| |||| |||| | Sbjct 22224 TCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCGGTGGTGCTGGCAACGCGTG 22283 Query 13185 ATTACGTTGATGACAAAATTGCAGAGCACGAACAGTCACGACGT---CACCCGGACGCCT 13241 || || ||||| || || ||| ||| | | | ||| || || ||||| Sbjct 22284 GCTATGTGGATGATGCTATCGCTACGCATGAAAA---AAGCCGTAAACATCCAGACGCAA 22340 Query 13242 CGCTGACAGCAAAAGGTTTTACTCAGTTAAGCAGTGCGACCAACAGCACGTCTGAAACAC 13301 |||| |||||||| ||| || || |||| ||| || |||| | |||| | Sbjct 22341 CGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGACAGTGCCAGTGAAGCGA 22400 Query 13302 TGGCCGCAACGCCGAAAGCGGTAAAGGCCGCGTATGACCTGGCTAACGGGAAATATACCG 13361 |||| |||||||||||||| || || | | |||||||| || | ||||||||| | | Sbjct 22401 TGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCCAGCGGGAAATACTCAG 22460 Query 13362 CACAGGACGCCACCACAGCGCGAAAAGGCCTTGTCCAGCTTAGTAGCGC 13410 ||||||| || | ||| || ||| ||| ||||| ||| |||||||| Sbjct 22461 CACAGGATGCGAGCACTAGGCAAAAGGGCATTGTCAGGCTGAGTAGCGC 22509 Score = 129 bits (142), Expect = 1e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 13271 AGCAGTGCGACCAACAGCACGTCTGAAACACTGGCCGCAACGCCGAAAGCGGTAAAGGCC 13330 || || ||||||||||||| |||||| |||| || ||||| ||||| || || || Sbjct 22582 AGTAGCGCGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCAGTGAAAGCA 22641 Query 13331 GCGTATGACCTGGCTAACGGGAAATATACCGCACAGGACGCCACCACAGCGCGAAAAGGC 13390 || |||||||| || | ||||||||| | |||||||| || | ||| || ||| ||| Sbjct 22642 GCCTATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACCAGGCAAAAGGGC 22701 Query 13391 CTTGTCCAGCTTAGTAGCGCCACCAACAGCACGTCTGAAACGCTCGCCGCAACACCAAAA 13450 ||||| | | |||||||| |||||||||| ||||||| | || || ||||| ||| Sbjct 22702 ATTGTCAGGTTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCTGCCACACCCAAA 22761 Query 13451 GCCGTTAAG 13459 || || ||| Sbjct 22762 GCGGTGAAG 22770 Score = 104 bits (114), Expect = 5e-18 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 10748 AACCCGCGTCACCCTGGACACCCCGGAGGTGGTCTGCACCAACAGGCTGATTACCGGCAC 10807 ||||| ||| ||| || || ||||| ||| | || ||||||| ||||| || ||||| Sbjct 19789 AACCCATATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCAC 19848 Query 10808 GCTGGAAGTGCAGAAAGGCGGGACGATGCGCGGCAACATTGAACACACCGGCGGTGAACT 10867 |||||||||||| |||||||| |||| ||||||||||| ||||| |||||| | | Sbjct 19849 GCTGGAAGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTT 19908 Query 10868 CTCATCAAACGG 10879 | | || ||||| Sbjct 19909 CACCTCCAACGG 19920 Score = 87.8 bits (96), Expect = 4e-13 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 24516 CGGATTAAGAGAAATGGCGTCCTGAAGGTACTCTGGCGCAAAATGAGCGTAAACCATAGT 24575 |||||| || | ||||| || || || || ||||| || | || || || ||| || Sbjct 173 CGGATTGAGCGCTATGGCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGT 232 Query 24576 TTGCTCAATCCGCGTGTGACCTAGTATCCGTTGTAGCGTGATAATACTTCCTCCATTAAT 24635 |||| ||| | ||| || | |||| |||||||| | |||| | ||||||||||| Sbjct 233 CTGCTGAATGTTTGCGTGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAAT 292 Query 24636 CATGAAATGAGTGGCAAAGCTGTGCCTTAGTGCATGTGTGGCTTGCCCCATTGGCAAATC 24695 ||| || || | ||||| | || | |||| | |||| ||||| || | |||||||| Sbjct 293 CATAAAGTGCGCCGCAAATGTATGACGTAGTACGTGTGCTGCTTGGCCTTTAGGCAAATC 352 Query 24696 CGGTTT 24701 ||||| Sbjct 353 GGGTTT 358 Score = 87.8 bits (96), Expect = 4e-13 Identities = 224/340 (66%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 12296 TGTGGAACCCGGACACCTGTCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGG 12355 ||||| | |||| | || ||| | | |||||||| | ||||| |||||||| || | Sbjct 21331 TGTGGGATGCGGAGAAATGCCCGCTAGACCTGCTGCCTTTTCTGGCCTGGGCGTTGTCCG 21390 Query 12356 TCGACAGGTGGGATGAAAAGTGGCCGGAAGCGACAAAACGCGCCGTTATCCGCGATGCCT 12415 | ||| | |||||| || ||| | ||| || || || || || |||| Sbjct 21391 TTGACCGCTGGGATAAACGCTGGTCAGAACAAACCAAGCGTCAGGTGATTAAATCAGCCT 21450 Query 12416 ATTTCATCCACTGTCATAAGGGCACGATAGGTGCAATCCGGCGTGTGGTGGAGCCGCTCG 12475 || || ||| | || || ||||| || | || | || || ||||| ||||| | | Sbjct 21451 GGTTGATACACCGCCAGAAAGGCACCATTGCCGCGCTGCGCCGGGTGGTTGAGCCATTTG 21510 Query 12476 GCTATCTCATCAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCCCGGCACCTTCCGGC 12535 | || | | ||||| || |||||| ||| | | | ||| || ||||| | | Sbjct 21511 GTTACTTGCTGCGCGTGATCGAATGGTGGCAAACCGGCGGTGTGCCGGGAACCTTTCACC 21570 Query 12536 TTGATATTGGTGTACTGGAAAGCGGTATCACAGAGGCAATGTATCAGGAAATGGAACGGC 12595 | ||||| || || | ||| | |||||| || || | || | | || || || |||| Sbjct 21571 TGGATATCGGCGTGCAGGACAACGGTATTACTGAAGAAACCTTTTTAGAGATTGAGCGGC 21630 Query 12596 TGATTGCTGATGCCAAACCTGCAAGCCGTCACCTTATTGG 12635 |||||||||| ||||| || |||||||| ||| |||| Sbjct 21631 TGATTGCTGACGCCAAGCCGCTTAGCCGTCA-CTTGTTGG 21669 >seq2852 Length=1514 Score = 91.5 bits (100), Expect = 3e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25322 GCCATTCTTTATTGTGGTGGTTGTACAACGTGTATTTCTCGAAAGCGACAGCTTCGCTTT 25381 |||||||||| |||| || |||| ||||| ||| || || || ||||| || Sbjct 597 GCCATTCTTTTTTGTCCGCCCTGGACAATGTGTAGCGCTCAAAGGCTACCGCTTCCGTTC 656 Query 25382 TCTTATCAAACTTCCTACGGATGCGTTTTCCATTACGTCCAGTAGGGCGGATGTCCACTT 25441 | || ||||| || || ||||| || || | ||||| | ||||| |||||||||| Sbjct 657 TTTTCTCAAATCGCCGCCGAATGCGCTTCCCGCTGCGTCCGATCGGGCGTATGTCCACTT 716 Query 25442 CATATCGACCATCATCGAGTTTTTTGATTGCCATCAGAAAACCCTCCGAG 25491 | ||| |||| |||| || || || || | ||| ||||| ||||||||| Sbjct 717 CGTATTGACCCCCATCAAGCTTCTTAATCGACATAAGAAAGCCCTCCGAG 766 >seq3204 Length=7776 Score = 80.6 bits (88), Expect = 6e-11 Identities = 165/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 22881 AGCGACCGTCTGATGAGCATGACCCTGACGGATAACCGGGGCTTTGAGGCTGACCAGCTT 22940 ||||| ||||| ||| | | ||||| ||||| || || ||||| ||||||||| || Sbjct 1478 AGCGATCGTCTAATGTCGCTCTCACTGACCGATAATCGCGGATTTGATGCTGACCAG-TT 1420 Query 22941 GAT-ATTGAACTGAACGATGCCGACGGGCAGGTCGGGCTGCCGGTTCGTGGCGCTGTCCT 22999 || || ||| | || ||||||| | | | || ||||| ||||| || | | Sbjct 1419 GACGATCTCACTCGATGACACCGACGGTCTGCTTGGTCTGCCCTCACGTGGGGCAGAGAT 1360 Query 23000 GACGGTGTATATCGGCTGGAAAGGTTTTGCCCTGGTATGCAAAGGGAAATTTACCGTTGA 23059 || ||| || |||||| ||| | || | | ||| ||| | ||||||||| Sbjct 1359 TGCGCTGTCCATTGGCTGGCTGGGTGAACCGTTGATTTACAAGGGGCGGTATACCGTTGA 1300 Query 23060 TGAGGTTGAACACCGGGGCGCACCGGATGTAGTCACCATCCGCGCCCGGAGTGCAGATTT 23119 |||||| | || ||| ||||||||||| ||| |||| ||||| || || ||||| Sbjct 1299 TGAGGTAGCCCATGAAGGCCCACCGGATGTACTCAACATCACGGCCCGTAGCGCGGATTT 1240 Query 23120 TCG 23122 ||| Sbjct 1239 TCG 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107370940442880