Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 2e-14 seq676 89.7 8e-13 >seq10 Length=2352850 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| | || ||||| || | ||| ||||| || || || || ||||| Sbjct 820801 CCACCTCGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAG 820742 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || |||||||| ||||| || || | | ||| || || |||||| Sbjct 820741 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGAGGA 820682 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| |||||||| || Sbjct 820681 ATTCCCTCTTTATCCTG 820665 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/230 (66%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | || | ||| | || || ||||| || || || |||| Sbjct 820119 TTCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTG 820060 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | || || |||||||| ||||| || ||||| | || ||||| || | Sbjct 820059 AAAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTG 820000 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||||||||| ||| || || ||| | Sbjct 819999 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGA 819940 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| ||||| || || ||||| |||| || || |||||| Sbjct 819939 CTTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 >seq676 Length=265522 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||||| || | ||||||||| || || || ||||| ||| Sbjct 178328 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 178387 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || |||||||||||||| || |||| ||| ||||| || || ||| Sbjct 178388 AGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGA 178447 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || ||||| || Sbjct 178448 ATTCCCTCCTTATCCTG 178464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743489521090560