Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 1e-12 seq14 86.0 4e-12 >seq10 Length=2352850 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | ||| |||| ||| | || ||||||||| ||||||||||| || Sbjct 820346 TCCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGA 820287 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| | | | || |||| || || || ||||| || | ||||||||||| ||| Sbjct 820286 CAGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 820227 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | |||| || | | || || Sbjct 820226 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCAC 820167 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || | ||||||||| || |||||||| Sbjct 820166 TTCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCAT 820119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | ||| ||| || || ||||||||||| || Sbjct 819890 TCCACCACGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 819831 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||||||||| || ||||| || || || |||||||| || Sbjct 819830 GAGGGTTCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGG 819771 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||| ||||| ||| || ||||| | || | || | || | | |||| Sbjct 819770 GATTCCCTCTTTGTCCTGGATC-TTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGA 819712 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || || | || ||||| ||||||||||| Sbjct 819711 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819663 >seq14 Length=2234412 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| ||| | || ||| ||||| |||||||| || ||||| || | Sbjct 1933612 CTGAGTACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCA 1933553 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | ||| || || |||||||| |||| ||||||||| ||| | || ||||||| Sbjct 1933552 TCCTCGAGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 1933493 Query 34295 TCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || || ||| ||||| | || | || | || | | || || || | ||||| Sbjct 1933492 TCCTGAAT-TTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGAT 1933434 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || || || ||||| || ||||||||||| Sbjct 1933433 GGTCTTCCCAGTTAGGGTTTTTACGAAGATCTGCAT 1933398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323056376238080