Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10 120 2e-22 seq676 102 6e-17 seq14 82.4 6e-11 >seq10 Length=2352850 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| || | || || || || |||||||||||||||||||| | Sbjct 820118 TCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGA 820059 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||||||||| || || |||| | | |||||||| || Sbjct 820058 AAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGG 819999 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| ||||| | || || || | | ||| ||||||| | ||| Sbjct 819998 GATACCTTCTTTATCTTGAATTT-TAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGA 819940 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||||| ||||||| |||||||| || |||||||| |||||| Sbjct 819939 CTTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| ||||| |||||||| || ||||||||||||| || ||| ||| ||| Sbjct 821243 AAGAACCAAGTGGAGTGTAGATTCTTTCTGGATGTTGTAGTCGGACAAAGTTCTACCATC 821184 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| |||||| || ||| |||| | | |||||||| || | ||| ||||| || Sbjct 821183 TTCCAGTTGTTTACCAGCAAAGATCAAACGCTGTTGATCTGGAGGAATGCCCTCCTTGTC 821124 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||||| | | ||| |||||| || ||| ||| | |||||| | Sbjct 821123 CTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGT 821064 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| || | ||||| || ||||| |||||| Sbjct 821063 CTTGCCAGTTAGGGTTTTGACGAAAATCTGCATT 821030 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | || |||| ||| |||||||||||||| || ||||||||||| | Sbjct 820346 TCCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGA 820287 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||||| |||||| || || |||| | | || || || ||| Sbjct 820286 CAGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 820227 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || || | |||||| | ||| |||||| | ||| Sbjct 820226 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCAC 820167 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||||| | || || ||||| ||||| || ||||| |||||| Sbjct 820166 TTCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCATT 820118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||| | | || | | |||| Sbjct 820786 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTCCTGCCATCT 820727 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| || | |||||| || || | || || ||||| Sbjct 820726 TCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGAGGAATTCCCTCTTTATCC 820667 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | ||| |||||| || ||| ||| | |||||| | Sbjct 820666 TGGATCTTCGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGTC 820607 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| || || |||||||| |||||| Sbjct 820606 TTGCCAGTCAGAGTCTTGACAAAAATCTGCATT 820574 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| || | || || || || ||||| || || ||||| || | Sbjct 821030 TCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGA 820971 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||| ||||||||||| || || |||| | | || || || ||| Sbjct 820970 GAGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 820911 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | || || || || || | | || ||||| | | ||| ||||||| || ||| Sbjct 820910 AATTCCCTCTTTGTCCTGGATCT-TGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTA 820852 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || |||||||| |||||||| || ||||| Sbjct 820851 CTTCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 >seq676 Length=265522 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||| ||| |||| |||||| || ||||| || || |||||||| || | Sbjct 178328 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 178387 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||||| || || |||| ||||| || || || ||| Sbjct 178388 AGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGA 178447 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| || | | ||| || | | | || ||| || |||| Sbjct 178448 ATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGACC 178507 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||||||| | ||||| |||| ||||| || || || ||||||||| Sbjct 178508 TCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATTTTT 178558 >seq14 Length=2234412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| ||| ||||||| ||||||||| ||||| || ||||||||||| || | | Sbjct 1933624 CCACCACGTAATCTGAGTACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGAC 1933565 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || || | || || || || || || ||| Sbjct 1933564 AGGGTGCGTCCATCCTCGAGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGA 1933505 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||||| | || ||||| | | | |||||| | ||| Sbjct 1933504 ATGCCCTCCTTGTCCTGAATTT-TGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCAC 1933446 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | ||||||| | || || || | |||||||| || || ||||| || |||| Sbjct 1933445 CTCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGTTGGAACT 1933389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325654924160