Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14 122 8e-23 seq320 104 2e-17 >seq14 Length=2234412 Score = 122 bits (134), Expect = 8e-23 Identities = 525/822 (64%), Gaps = 25/822 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | || | ||| | || | ||| || || | ||| ||||||||||| Sbjct 776543 TCGACAGTGAACTGAATGGCATTGGTGGCAGGTTTAGTCCTGAGATAGTACATTCCAGTC 776484 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || | ||| ||| | |||||||| || ||||| | || ||||| Sbjct 776483 TTCAATCCAGCTTCCCAACCGAAGAAATGCATGGACGTGAGTTTCTCAGTGGTTGGATTG 776424 Query 36910 TCTATATATATTGTCATTGATTGACTTTGA----TCTATAAACGCACCTCTGTCGGCTGC 36965 | || | | |||||| ||||| ||| || | ||| || || | || || || Sbjct 776423 GCCATGTGAA----CATTGAGTGACTGTGACTGATCGACAAAAGCCCCGCGATCAGCAGC 776368 Query 36966 CATTTCTAAAATACATTTT-TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATAT 37024 ||||| | || ||| | || | |||||||| || ||| | || | | || | | Sbjct 776367 CATTTTGAGGAT-CATCCTCTGGGGAATCTCCCAGACTGTTCTGTAGAGTGCCTTGAGGT 776309 Query 37025 TATCTGGTAAATC-TAAATGTT--GAATAGAACCATTATGTAACACAATTGT---ATTCT 37078 |||||| || | ||| | |||| || ||||||| | | ||| | ||||| Sbjct 776308 CTGCTGGTATTTCCTCAATACTCTGAATTGACCCATTATT---CGCTATTATCAGATTCT 776252 Query 37079 TTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAA 37138 | |||| || | ||| | ||| | | | || || |||| || || ||||| || | Sbjct 776251 TCATGTGATCGTCCCAGAGATTGCGATCAGTGAGGTCCCTCAGCAGATGGGGATTGACGA 776192 Query 37139 CCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGG 37198 ||||||| || ||||| | || | || | || || ||||| || || || || |||| Sbjct 776191 CCTGAAATTCACCAGACAGCACACGCCTGGAGTAGATGTTGCTGGTGTAGGGCTCGATGG 776132 Query 37199 ACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGC 37258 ||| || |||| | || || | ||| ||||| || ||||||||||| | ||| || Sbjct 776131 CCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATTGGTGCCAGTAGCAGAG 776072 Query 37259 TATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTG 37318 || || | || ||| | ||| ||| || |||| | ||| ||||| | | || Sbjct 776071 AGTTCCTGACCCCGTGTTGAGATATTTTCTCCTTGAGTTTAGCCCAGTCCCAGAGGTTTG 776012 Query 37319 TTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTAT 37378 | || | |||||| || || || || || || | || |||| || | || | Sbjct 776011 TCGGTGTGACACCCCACATGTCGTACTGGAGGATGCCCTGGCTGACTGGCGAGCCTTTGT 775952 Query 37379 ATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAAT 37438 | ||||| |||| || | || || ||||| || | || || || |||| | Sbjct 775951 ACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCACAGGATGCCTCCAGGGCACCATAGT 775892 Query 37439 ATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGC 37498 | | || ||||| || || || || | | | | || || || || ||||||| ||| | Sbjct 775891 AGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGGGCCTCATCACTGTCGAATGGATAAC 775832 Query 37499 CCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCT 37558 || | || || |||| |||| ||||||||| || || || ||||| | ||| || Sbjct 775831 GCATCAGTAGGAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCA 775772 Query 37559 TATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGA 37597 | || || ||| | | || |||||||| ||||||| Sbjct 775771 TGTTGGAGACTCTTGCC---TCCTCAACTGGATAGTAATTGA 775733 Score = 102 bits (112), Expect = 8e-17 Identities = 310/478 (65%), Gaps = 6/478 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || ||||| || ||||| || || ||||| | || | || | || || ||||| Sbjct 232654 AGATGGGGATTGACGACCTGGAATTCACCAGACAGCACGCGCCTGGAGTAGATGTTGCTG 232595 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || || |||| ||| || |||| | || || | ||| ||||| || |||||| Sbjct 232594 GTGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATT 232535 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 ||||| | ||| || || || | || ||| | ||| ||| || |||| | | Sbjct 232534 GGTGCCAGTAGCAGAGAGTTCCTGACCCCGTGTTGAGATATTTTCTCCTTGAGTTTAGCC 232475 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | | ||| || | |||||| || || || || || || | || Sbjct 232474 CAGTCCCAGAGGTTTGTCGGTGTGACACCCCACATGTCGTACTGGAGGATGCCCTGGCTG 232415 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 |||| || | || || ||||| |||| || | || || ||||| || | Sbjct 232414 ACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTCACAGGATGCC 232355 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || || |||| || | || ||||| || || || || | | | | || || || Sbjct 232354 TCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTGGGCCTCATCA 232295 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||||| ||| | || | || || |||| |||| ||||||||| || || || Sbjct 232294 CTGTCGAATGGATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAACTCCAATTCCC 232235 Query 37543 ATGGGTCTATGTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGA 37597 ||||| | ||| || | || || ||| | | || |||||||| ||||||| Sbjct 232234 ATGGGACGGTGTCTCATGTTGGAGACTCTTGCC---TCCTCAACTGGATAGTAATTGA 232180 >seq320 Length=265502 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||| || ||||| ||||| |||||||| | ||| ||||||||||| ||||||||||| Sbjct 14906 ATACATCTCAGAATGTATATTCTCCATAGCAACTTGGAATCCATAGAAGCATCGTGCCTC 14847 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | || || ||| | ||||||||| | | ||||||||| ||||| ||||| Sbjct 14846 AGTGACTTGCACCTCCTGACTGAATCTTTCCACAAGATTCTCATTCACAATTCCATCTGA 14787 Query 12040 AGATGCAAAAAATGCTAGTA 12059 | |||||||| ||||||| Sbjct 14786 GGCAGCAAAAAAAGCTAGTA 14767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501561169920