Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10 141 9e-29 seq14 111 2e-19 seq676 95.1 1e-14 >seq10 Length=2352850 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||||| || | ||||| || |||||||| ||||| |||||||| Sbjct 819662 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 819603 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || |||||||| |||||||| |||||||||||||||| || ||||| Sbjct 819602 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGG 819543 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| || ||| | | ||| | |||||| | || ||| || Sbjct 819542 GATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGAC 819483 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || |||||||| || ||||| || ||||| Sbjct 819482 CTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819435 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||||| || | ||||| || |||||||| ||||| |||||||| Sbjct 818978 GCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGA 818919 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || |||||||| |||||||| |||||||||||||||| || ||||| Sbjct 818918 AAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGG 818859 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| || ||| | | ||| | |||||| | | ||| || Sbjct 818858 GATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGCCTCAAC 818799 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| ||||| ||||| ||||| || |||||| Sbjct 818798 CTCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATA 818750 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| ||||| | ||||| ||||| || ||||| || ||| Sbjct 821258 GCCACCTCTGAGACGAAGAACCAAGTGGAGTGTAGATTCTTTCTGGATGTTGTAGTCGGA 821199 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||||| || |||||||||||| |||||| ||| || ||||| ||||| Sbjct 821198 CAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAAGATCAAACGCTGTTGATCTGGAGG 821139 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| |||||| || | | ||| | |||||| | || ||| || Sbjct 821138 AATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTAC 821079 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | ||||| ||||| || ||||| Sbjct 821078 TTCGAGTGTGATGGTCTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 821031 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || || ||||||||||| || || | Sbjct 819889 CCACCACGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAGTC--TG 819832 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| ||||| | ||| |||||||| |||||||||||||||| || |||| Sbjct 819831 AGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAG 819772 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || |||||||| ||| || ||| | | ||| | |||||| | || ||| | Sbjct 819771 GGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGA 819712 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| || |||||||| || ||||| || ||||| Sbjct 819711 CCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || ||||| | || || ||||| || ||||| || || | Sbjct 820345 CCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGAC 820286 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||||||||| |||||| ||| ||||| || || || Sbjct 820285 AGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820226 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 820225 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCACT 820166 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 820165 TCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCAT 820119 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | || | || ||||||||||||||||| || || Sbjct 820117 CCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGAA 820058 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || | ||||||||||| |||||| ||| || ||||| || || Sbjct 820057 AGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGG 819998 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| | |||| | | ||| | ||||| | | || || Sbjct 819997 ATACCTTCTTTATC-TTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGAC 819939 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| ||||| || || || || || ||||| Sbjct 819938 TTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCAT 819891 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | || | || |||||||| || || || ||||| Sbjct 821029 CCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAG 820970 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| || || | ||||||||||| |||||| ||| ||||| || || || Sbjct 820969 AGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820910 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || ||| | | ||| | ||||| | || ||| || Sbjct 820909 ATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTACT 820850 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| || ||||| || || ||||| Sbjct 820849 TCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | || | || |||||||| || || || ||||| Sbjct 820573 CCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAG 820514 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| || || | |||||||||||| |||||| ||| ||||| || || || Sbjct 820513 AGTGTTCTCCCATCCTCCAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820454 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | ||| | ||||| | || || || Sbjct 820453 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCTTCGACT 820394 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||| || || | || || |||||||| ||||| Sbjct 820393 TCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACGAATATCTGCAT 820347 >seq14 Length=2234412 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| | | || ||||||| || || || || |||||||| ||||| | Sbjct 1933624 CCACCACGTAATCTGAGTACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGAC 1933565 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || ||||||||||||||||| | ||||| | ||||| || || || Sbjct 1933564 AGGGTGCGTCCA-TCCTCGAGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGG 1933506 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||||| Sbjct 1933505 AATGCCCTCCTTGTCC-TGAATTTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCA 1933447 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||| || || | ||||||||||| || ||||| Sbjct 1933446 CCTCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTACGAAGATCTGCAT 1933398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 231/350 (66%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| |||| ||| |||| ||||| || |||||||| || | ||| || || | Sbjct 232267 AATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACT 232208 Query 153510 tttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACA 153569 |||| | ||||| |||||| ||||| |||||| | | | | | | | |||| Sbjct 232207 CTTGCCTCCTCAACTGGATAGTAATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACA 232148 Query 153570 TGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT-TCCATTAATG-----ATATAT 153623 ||| || || | | | | || ||| | || | | | | || | | | Sbjct 232147 ACTTTGACGACTGTCTTGAGTTTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAAC 232088 Query 153624 TTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGT 153683 ||||||| || ||||| ||||| ||||| || ||| ||| |||||| | || | Sbjct 232087 ATGTTGACTGCTATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCA 232028 Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTG 153743 || || || | ||||| |||||||||||||| || || | |||||| ||| Sbjct 232027 ACGATCTCGGTGCACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTC 231968 Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 | ||| || || |||||||| |||||||| || || || || || |||| Sbjct 231967 CTGTTGCAGGCATCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTG 231918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 231/350 (66%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| |||| ||| |||| ||||| || |||||||| || | ||| || || | Sbjct 775820 AATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACT 775761 Query 153510 tttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACA 153569 |||| | ||||| |||||| ||||| |||||| | | | | | | | |||| Sbjct 775760 CTTGCCTCCTCAACTGGATAGTAATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACA 775701 Query 153570 TGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGT-TCCATTAATG-----ATATAT 153623 ||| || || | | | | || ||| | || | | | | || | | | Sbjct 775700 ACTTTGACGACTGTCTTGAGTTTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAAC 775641 Query 153624 TTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGT 153683 ||||||| || ||||| ||||| ||||| || ||| ||| |||||| | || | Sbjct 775640 ATGTTGACTGCTATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCA 775581 Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTG 153743 || || || | ||||| |||||||||||||| || || | |||||| ||| Sbjct 775580 ACGATCTCGGTGCACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTC 775521 Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 | ||| || || |||||||| |||||||| || || || || || |||| Sbjct 775520 CTGTTGCAGGCATCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTG 775471 >seq676 Length=265522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||||| ||||| || || || ||||| ||||| | |||| || | || || Sbjct 177662 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCA-TCCTC 177720 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || ||||| ||||||| | ||||| || || || || || || ||||| Sbjct 177721 AAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 177780 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| || | | || | ||||||| || ||| ||||||| ||| | ||||| Sbjct 177781 GATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCAAGGGTTATGGTCTT 177840 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || | || || ||||||||||||||| || Sbjct 177841 TCCTGTGAGGGTCTTGACGAATATTTGCATACCT 177874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039395225600