Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq664 116 5e-21 seq320 111 2e-19 seq14 87.8 3e-12 seq28 84.2 3e-11 >seq664 Length=469550 Score = 116 bits (128), Expect = 5e-21 Identities = 460/725 (63%), Gaps = 54/725 (7%) Strand=Plus/Minus Query 126730 GTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCG 126789 ||||||| ||||| | || ||||| || ||||| || ||| || || ||||| || Sbjct 61406 GTCGTCAATGCAGGCATTCCCAGTCTAATTCCGCTGGGATTGAAGGCACTTTTGTCCCCA 61347 Query 126790 GGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCT 126849 || |||||||| || || ||||| || | || ||||| | ||| ||| | | Sbjct 61346 GGCACTGTGTTCTTATTACAAGCAATCGAGATGTCCTCCAGGATCCTCTCAGCCTTGGAT 61287 Query 126850 CCTGCGAGTCCCACACTGCGC---AAATCCACTAGAATCAGATGCACATCGGTACCGCCA 126906 || | || || || || | | || ||||||| |||||||||||| || || ||| Sbjct 61286 CCAGTGA---CCCCAGTGTTCCTGAGGTCGACTAGAAGCAGATGCACATCAGTCCCACCA 61230 Query 126907 GTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCATTTCGCACC 126966 ||||||| ||||||| |||| ||| | ||| || | ||| ||||| |||| Sbjct 61229 GTGGTGATCTTGTAGCCACGTGCTTTGAGACTCTCGCACAGCTTCTGCGCATTCTTCACC 61170 Query 126967 ACTCGTCTTTGGTAG--AGTGCAAACTCTAG-AGTGGTGGCCTGGTGCATTGCGGTGGCG 127023 || | | ||||| | || |||||| | || | ||| || | ||| || || || Sbjct 61169 ACCTGCTTCTGGTAATCAATG--AACTCTGGCAGCTG-GGCTTGTTTCATAGCTGTTGCA 61113 Query 127024 ATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGC------- 127076 || | || || ||||||||| || ||||| || || || || ||||| || Sbjct 61112 ATGCCAGCTATTTGGTGATTGTGGGGCCCACCCTGGAGCCCCGGGAACACTGCAGCATTG 61053 Query 127077 ---------------TCGTTCAATTTCCT------------------GCT-CT-AGTGAT 127101 |||| || | || | ||| || | | Sbjct 61052 ATCTTACTCTCAAGGTCGTACATTATCTTTTCACCGTTTTTGCCGATGCTTCTGACTCCC 60993 Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 || ||| | ||||||||||| || |||||||| || || |||||||| || || ||| | Sbjct 60992 TTTCGGAAGAAGATGACTCCTGCGCGAGGACCCCTCAGGGTCTTGTGGGTAGTTGTGCTG 60933 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | ||| || | |||||||| | ||||| || | || | ||| || | |||| Sbjct 60932 ACGACGTCGCAGTGGTCAAAGGGACTTGGAATCACCCCAGCTGCGACCAATCCGGAAATG 60873 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||| | || ||| | | |||| ||||||||||||||||| | Sbjct 60872 TGCGCCATGTCGGCGAAGAGGTAGGCGTTGTTCTCATCAGCAATCTCTCGGAATCGCTTG 60813 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | || | ||||| | ||||| || || | | || ||||| || Sbjct 60812 TAGTCGAGGCATCTGCTGTAGCAGGAGACTCCGGCAATTATGATTTTTGGCTTGAAGAGT 60753 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || || |||| | ||||| || |||| | |||||||| || | || ||||| Sbjct 60752 TTTGCGTTCTCTGATAGTTTATTGTAATCGATTAATCCAGTCTCTGGGTTTACTTTGTAG 60693 Query 127402 GGCAT 127406 ||||| Sbjct 60692 GGCAT 60688 >seq320 Length=265502 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||| |||||| ||||| | || |||||||| || ||||| || ||||| || ||||||| Sbjct 15333 CGTTCGCCGAAAGACTAATCGCCTTCGCCGCTGTCGAGGGAATTTTCTTCTCTGGTAGTT 15392 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 | || |||||||| ||| | || ||||| ||||||||||| || || || |||||| | Sbjct 15393 TCGCTGCCATCTTCTGGTTGAAAAAGCGTGGACTCATGCCTGGTCTCACTTTCAGTAATG 15452 Query 125533 AGTTTATATCTCGAGACGA 125551 || |||| || | ||||| Sbjct 15453 AGCTTATCTCCAGGGACGA 15471 >seq14 Length=2234412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 176/261 (67%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 ||||| | || |||| || || || ||| | || |||||||||||||| || ||||| Sbjct 231699 CGAGCACGTGAGCTGTTCTACGCCCTGTGGATACCCGATTTGTTCATGAAACGTGTCAAG 231758 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | | || |||||| | ||||||||| || || || || || | || ||| Sbjct 231759 GCAGACGGTCCCTGGAGTTTGATGTGCCCCCACGAGTGTCCAGGCCTCTGTGACACTTGG 231818 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 || || || || || |||||| |||||| | |||| || ||| | | | | Sbjct 231819 GGTGAGGAATTCGATAAGCTGTACACAAAGTACGAGGAGGAGGCTCGTTACAAGCGTCAA 231878 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || || || || ||||||| || || | | | | || || |||||||||||||| Sbjct 231879 GTGCCAGCCCGTGAGCTGTGGACAGCAATTCTAATGTCACAAGTTGAGACTGGAACTCCC 231938 Query 97224 TACATTCTCTACAAGGATACC 97244 ||||| || ||||||||| || Sbjct 231939 TACATGCTGTACAAGGATGCC 231959 >seq28 Length=2923915 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||||||||| |||||| || ||||||||||| | |||| ||| | ||| | |||| Sbjct 2127749 CCGTGGAGCCCACCATGTGGCTCTACATGATGGCTTACATGGTGACGTCTGTCGTTGAGC 2127808 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 | || |||| || || | || ||| ||||||||| || | |||| |||||| ||| Sbjct 2127809 AAGCTTTTTTTGTCCACAAGGCATGCCGCGTCAACCACGGATTCTCGGAAGAGGTCTGCA 2127868 Query 49917 ACAACATTAGC 49927 | ||||| ||| Sbjct 2127869 AGAACATCAGC 2127879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741022443463680