Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_004456.1
Length=43198
Score E
Sequences producing significant alignments: (Bits) Value
seq3161 96.9 1e-15
seq2531 96.9 1e-15
seq2830 89.7 1e-13
seq3597 84.2 6e-12
>seq3161
Length=3056
Score = 96.9 bits (106), Expect = 1e-15
Identities = 92/115 (80%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 39485 CATATTCCCCTTGCGGGTGTTCTATTCCGGGCTGTCATCCCGCCATAACAGGTATGGCTA 39544
|||||||||||||||||| || |||| || || || |||| | | | | | || ||
Sbjct 2881 CATATTCCCCTTGCGGGTATTGTATTACGC-CTCTCCACCCGGCCTT-CGGATGTGATTA 2938
Query 39545 CGCCAAATTGCAGGCATAAAAAAGCCGCAAGGCTATCGGGTGCGGTTGACTGCTT 39599
|||| |||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2939 CGCCGTTTTGCGGGCATAAAAAAGCCGCATGGCTATCGGGTGCGGTTGACCGCTT 2993
>seq2531
Length=1032
Score = 96.9 bits (106), Expect = 1e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39076 CTCTGCCATCTGGTTAAAGGCATTGATGTATGCCTCTTTGATGGCGGCGGCCTGCTTGCC 39135
|||| |||| ||||||| | | ||||| || || |||| || || |||| ||||||
Sbjct 368 CTCTTCCATGCGGTTAAACTCCTCAATGTAAGCTTCCTTGAACGCTGCTGCCTTCTTGCC 309
Query 39136 AGTGAAGCCCATAACCAGGAAGATAAAGCCGTCTTTGGTCATCTCG 39181
|||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 308 AGTGAAGCCCATGACGAGGAAGACGAAACCGTCTTTGGTCATCTCG 263
>seq2830
Length=1876
Score = 89.7 bits (98), Expect = 1e-13
Identities = 89/114 (78%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 39071 AGCTCCTCTGCCATCTGGTTAAAGGCATTGATGTATGCCTCTTTGATGGCGGCGGCCTGC 39130
|||| | || |||| ||||||| | |||||| || || |||| || || |||| |
Sbjct 1440 AGCTGCCCT-CCATGCGGTTAAACTCCGCGATGTAAGCTTCCTTGAATGCTGCTGCCTTC 1382
Query 39131 TTGCCAGTGAAGCCCATAACCAGGAAGATAAAGCCGTCTTTGGTCATCTCGTAG 39184
||||||||||||||||| || ||||||| |||||||| || |||||||| |||
Sbjct 1381 TTGCCAGTGAAGCCCATTACGAGGAAGACGAAGCCGTCCTTCGTCATCTCATAG 1328
>seq3597
Length=1779
Score = 84.2 bits (92), Expect = 6e-12
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 39485 CATATTCCCCTTGCGGGTGTTCTATTCCGGGCTGTCATCCCGCCATAACAGGTATGGCTA 39544
|||||||||||||||||| || |||| || || || |||| | | | | | || ||
Sbjct 1604 CATATTCCCCTTGCGGGTATTGTATTACGC-CTCTCCACCCGGCCTT-CGGATGTGATTA 1661
Query 39545 CGCCAAATTGCAGGCATAAAAAAGCCGCAAGGCTATCGGGTGCGGTTGACTGCTT 39599
|||| || | ||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 1662 CGCCGTTTTACGGGCATAAAAAAGCCGCATGGCTATCGGGTGCGGAAGACCGCTT 1716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138105492162560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |