Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004456.1 Length=43198 Score E Sequences producing significant alignments: (Bits) Value seq3161 96.9 1e-15 seq2531 96.9 1e-15 seq2830 89.7 1e-13 seq3597 84.2 6e-12 >seq3161 Length=3056 Score = 96.9 bits (106), Expect = 1e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 39485 CATATTCCCCTTGCGGGTGTTCTATTCCGGGCTGTCATCCCGCCATAACAGGTATGGCTA 39544 |||||||||||||||||| || |||| || || || |||| | | | | | || || Sbjct 2881 CATATTCCCCTTGCGGGTATTGTATTACGC-CTCTCCACCCGGCCTT-CGGATGTGATTA 2938 Query 39545 CGCCAAATTGCAGGCATAAAAAAGCCGCAAGGCTATCGGGTGCGGTTGACTGCTT 39599 |||| |||| ||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2939 CGCCGTTTTGCGGGCATAAAAAAGCCGCATGGCTATCGGGTGCGGTTGACCGCTT 2993 >seq2531 Length=1032 Score = 96.9 bits (106), Expect = 1e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39076 CTCTGCCATCTGGTTAAAGGCATTGATGTATGCCTCTTTGATGGCGGCGGCCTGCTTGCC 39135 |||| |||| ||||||| | | ||||| || || |||| || || |||| |||||| Sbjct 368 CTCTTCCATGCGGTTAAACTCCTCAATGTAAGCTTCCTTGAACGCTGCTGCCTTCTTGCC 309 Query 39136 AGTGAAGCCCATAACCAGGAAGATAAAGCCGTCTTTGGTCATCTCG 39181 |||||||||||| || ||||||| || |||||||||||||||||| Sbjct 308 AGTGAAGCCCATGACGAGGAAGACGAAACCGTCTTTGGTCATCTCG 263 >seq2830 Length=1876 Score = 89.7 bits (98), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 39071 AGCTCCTCTGCCATCTGGTTAAAGGCATTGATGTATGCCTCTTTGATGGCGGCGGCCTGC 39130 |||| | || |||| ||||||| | |||||| || || |||| || || |||| | Sbjct 1440 AGCTGCCCT-CCATGCGGTTAAACTCCGCGATGTAAGCTTCCTTGAATGCTGCTGCCTTC 1382 Query 39131 TTGCCAGTGAAGCCCATAACCAGGAAGATAAAGCCGTCTTTGGTCATCTCGTAG 39184 ||||||||||||||||| || ||||||| |||||||| || |||||||| ||| Sbjct 1381 TTGCCAGTGAAGCCCATTACGAGGAAGACGAAGCCGTCCTTCGTCATCTCATAG 1328 >seq3597 Length=1779 Score = 84.2 bits (92), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 39485 CATATTCCCCTTGCGGGTGTTCTATTCCGGGCTGTCATCCCGCCATAACAGGTATGGCTA 39544 |||||||||||||||||| || |||| || || || |||| | | | | | || || Sbjct 1604 CATATTCCCCTTGCGGGTATTGTATTACGC-CTCTCCACCCGGCCTT-CGGATGTGATTA 1661 Query 39545 CGCCAAATTGCAGGCATAAAAAAGCCGCAAGGCTATCGGGTGCGGTTGACTGCTT 39599 |||| || | ||||||||||||||||| ||||||||||||||| ||| |||| Sbjct 1662 CGCCGTTTTACGGGCATAAAAAAGCCGCATGGCTATCGGGTGCGGAAGACCGCTT 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138105492162560