Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10 102 6e-17 seq676 86.0 5e-12 >seq10 Length=2352850 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| | | || || || || || ||||| || || || |||||||| || Sbjct 820803 TGCCACCTCGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCTG 820744 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | ||||| |||||||| |||||| | || | |||||||||||| | Sbjct 820743 AGAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGGTCTGGAG 820684 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| ||||| || || || ||| || |||| || || || |||| Sbjct 820683 GAATTCCCTCTTTATCCTGGATCTTCGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTA 820624 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || |||||||| || |||||||| ||||| Sbjct 820623 CTTCGAGTGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCAT 820575 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || || || ||||| || |||| | || || | || Sbjct 818953 TGAAGGGTGGACTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGC 818894 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||| |||||| ||||| || ||||| |||||||| || ||| Sbjct 818893 TTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 818834 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| |||| || || || | || || || || |||||||| || || ||| Sbjct 818833 GCTTTGACATTTTCAATTGTGTCAGAAGCCTCAACCTCCAACGTAATGGTCTTGCCAGTC 818774 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || || || |||||| Sbjct 818773 AAGGTTTTCACGAAGATCTGCATA 818750 >seq676 Length=265522 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || || || ||||||||||| ||| | | ||||||| Sbjct 178346 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 178405 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||| | || ||||| |||||||| || || || Sbjct 178406 AATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGG 178465 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || |||||||| || || || | ||| ||||| || Sbjct 178466 ATCTTTGC-CTTCACGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTT 178524 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| ||||| || || || ||||| ||| Sbjct 178525 GCCCGTCAGCGTTTTCACGAATATCTGCATTTTT 178558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362161685013888