Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq2852 179 7e-41 seq2657 114 3e-21 seq3842 111 3e-20 >seq2852 Length=1514 Score = 179 bits (198), Expect = 7e-41 Identities = 363/534 (68%), Gaps = 15/534 (3%) Strand=Plus/Plus Query 24197 TGTGTATCGCTCAAATGCTAGTGCTTCAGCTTTTCTTTCGAATTTCCTGCGGATGCGTTT 24256 |||||| |||||||| |||| ||||| | | || | || ||| || || ||||| || Sbjct 625 TGTGTAGCGCTCAAAGGCTACCGCTTCCGTTCTTTTCTCAAATCGCCGCCGAATGCGCTT 684 Query 24257 TCCGTCGCGACCGCGAGGTCTAATGTCCACTTCATAGCGACCATCATCGAGCTTCTTAAT 24316 ||| ||| ||| || | ||||||||||| || |||| |||| ||||||||||| Sbjct 685 CCCGCTGCGTCCGATCGGGCGTATGTCCACTTCGTATTGACCCCCATCAAGCTTCTTAAT 744 Query 24317 TGCCATAAGAAAGCCCTCCGGCGCTGTATTCACCATCTTGGTAGCAAATGGTGAAAATGT 24376 | ||||||||||||||||| | | | | ||| ||| | ||| |||| || Sbjct 745 CGACATAAGAAAGCCCTCCGAGGAAGCA---ATCATTTTGAAAATCAATATAAAAAAGGT 801 Query 24377 AATCTTTATATAGAGTTAGCCAATCCTTTTCGCGGAGTGGTTGGACTCTGTTGACTCTGG 24436 || || | | ||||||||| | | |||| |||| || |||| ||| | Sbjct 802 AAGTAAAGTAAACACTTAGCCAATTTTGTGATCGGATTGGTGAGATATTGTTTCTTCTAG 861 Query 24437 CCCAATGTGCGCGAGAGCCGGTGCGATTTGTCCTGCGTCCGGCGCGGTTTTATCTGTCAT 24496 ||||||||| ||||| |||||||| | || || || ||||| || || ||||||||||| Sbjct 862 CCCAATGTGTGCGAGGGCCGGTGCTACCTGACCAGCTTCCGGTGCTGTCTTATCTGTCAT 921 Query 24497 AAGCCATAGAGCATATTTTTGGAATGTGGGATGCATAGTGATTTTTAGCAAA----GCTG 24552 ||||||| | |||||||| || | | ||||| | || |||| | ||| Sbjct 922 TAGCCATAAGGTATATTTTTCAAA--TTGCTTGCAT-CTAGTTAGAAGCATAACCGACTG 978 Query 24553 T--GCCACCGGGTTCAAAGTTTCCTCCTTCATATTTTTTAAGTGTGCTTAGCGGTAACTC 24610 | |||| ||||| || |||||| || || ||||| | || |||| | | | | Sbjct 979 TAGGCCA---GGTTCTGCGTGTCCTCCCTCGTAATTTTTTAACGTACTTAATGCCATCCC 1035 Query 24611 TATGATTTCACAGAATTTTGATTGGCTTAGCCCTTCAGCCTCACGCAAGGCCTTAATCTT 24670 |||||||||||||||| ||||| ||| || ||||||| | | ||| || || || Sbjct 1036 GCTGATTTCACAGAATTTCGATTGAGTTAAACCCTCAGCCTTTCTAATGGCTTTGATTTT 1095 Query 24671 TTCGCTTAATTTCATTTGACATGGTGACTATATAGGGACTAAACTCCCTCAAAA 24724 || | | | ||||||||| ||| | | || ||||| | ||| ||||| Sbjct 1096 TTGTCCCATATCCATTTGACAAGGTTCCAAGTCAGAGACTATATTCCTGCAAAA 1149 >seq2657 Length=15264 Score = 114 bits (126), Expect = 3e-21 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 23382 GCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCA 23441 |||| |||||||||||| || |||||||| ||||| | ||| || || || ||||| || Sbjct 14972 GCATGTTGCAGGTAGTCCGGGGCAAGGTGAGCATACGTCATAGTTTGTTGTATGCTGGCG 15031 Query 23442 TGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCGTTCATCATGAAATGGCTTGCG 23501 || || | ||||| || | || | || || || |||||||||| |||||||| ||| Sbjct 15032 TGCCCTAATATCTGCTGTAACGCCACTAAGTTTCCTCCGTTCATCACAAAATGGCTGGCG 15091 Query 23502 AATGTATGCCGCAGGATGTGGGTTGCCTGATTGGGTGGTATATCAGGTTTCAC 23554 |||||||| ||||| || || | | ||| |||||| |||||||| || Sbjct 15092 AATGTATGTCGCAGAATATGCGACGACTGGCCTTTTGGTATGTCAGGTTTAAC 15144 >seq3842 Length=22882 Score = 111 bits (122), Expect = 3e-20 Identities = 239/355 (67%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 12114 GGCGGCTTCTGGATGCGTGAGCTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTA 12173 || || |||||||| ||||| | || |||| ||| | || || | |||||||||| Sbjct 22085 GGGGGATTCTGGATACGTGAAATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTT 22144 Query 12174 TCCAACATGGCAGAAAGCTATAAGCCAGAACTGGCTGAAGGCTCCGGACGTGCGCAGACC 12233 ||||| || |||| ||||||||| || || |||||| ||||||| |||||| Sbjct 22145 GCCAACTGCGCCGAAACCTATAAGCCGCAATTGCAGGAAGGCAGCGGACGTATTCAGACC 22204 Query 12234 TGCCGCATGGTTATTATTCTCAGCAACGTGGCGTCCGTTGAGCTGAGTATTGATGCCAGC 12293 |||||| || | ||| || || | | | || ||| | |||||| || || Sbjct 22205 GTGCGCATGATTTTGATTGTCTCCAGCACAGAAACAGTATCGCTTAAAATTGAT-CCGGC 22263 Query 12294 AC-GGTGATGGCGACGCAGGATTACGTCGATGACAAAATCGCAGAGCATGAGCAGTCCCG 12352 |||| |||| |||| | || || ||||| ||||| |||||| | ||| Sbjct 22264 GGTGGTGCTGGCAACGCGTGGCTATGTGGATGATGCTATCGCTACGCATGAAAAAAGCCG 22323 Query 12353 CCGCCATCCTGACGCCACGCTGACAGAAAAAGGTTTTACTCAGTTAAGCAGTGCAACAAA 12412 ||||| ||||| ||||| | |||||| ||| || || |||| ||| || | Sbjct 22324 TAAACATCCAGACGCAACGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGA 22383 Query 12413 CAGCACCAGTGAAAAGCTGGCGGCAACGCCAAAAGCGGTCAAGGCAGCAAATGAC 12467 ||| |||||||| | ||||||||||||| ||||| || || || | ||||| Sbjct 22384 CAGTGCCAGTGAAGCGATGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGAC 22438 Score = 107 bits (118), Expect = 4e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23367 GGATTCAGAGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTC 23426 ||||| || || | ||||| |||||| ||||| || || ||||| ||||||| ||| ||| Sbjct 174 GGATTGAGCGCTATGGCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGTC 233 Query 23427 TGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCGTTCATC 23486 ||||||||| | || ||||||| |||| || || | | |||||||| || || ||| Sbjct 234 TGCTGAATGTTTGCGTGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAATC 293 Query 23487 ATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTG 23530 || || || || |||||||| || || | ||| | ||| || Sbjct 294 ATAAAGTGCGCCGCAAATGTATGACGTAGTACGTGTGCTGCTTG 337 Score = 98.7 bits (108), Expect = 2e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 9876 AACCCGCGTCACCCTGGACACACCGGAGGTGGTCTGCACCAACAGGCTGATTACCGGCAC 9935 ||||| ||| ||| || || ||||| ||| | || ||||||| ||||| || ||||| Sbjct 19789 AACCCATATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCAC 19848 Query 9936 GCTGGAAGTGCAGAAGGGCGGGACGATGCGCGGCAACATTGAACACACCGGCGGTGAACT 9995 |||||||||||| || ||||| |||| ||||||||||| ||||| |||||| | | Sbjct 19849 GCTGGAAGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTT 19908 Query 9996 CTCATCAAACGG 10007 | | || ||||| Sbjct 19909 CACCTCCAACGG 19920 Score = 93.3 bits (102), Expect = 8e-15 Identities = 212/319 (66%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 11424 TGTGGAACCCGGATACCTGTCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGG 11483 ||||| | |||| | || ||| | | |||||||| | ||||| |||||||| || | Sbjct 21331 TGTGGGATGCGGAGAAATGCCCGCTAGACCTGCTGCCTTTTCTGGCCTGGGCGTTGTCCG 21390 Query 11484 TCGACAGGTGGGATGAAAAGTGGCCGGAAGCGACAAAACGCGCCGTTATCCGCGATGCGT 11543 | ||| | |||||| || ||| | ||| || || || || || || | Sbjct 21391 TTGACCGCTGGGATAAACGCTGGTCAGAACAAACCAAGCGTCAGGTGATTAAATCAGCCT 21450 Query 11544 ATTTCATTCATTGTCATAAAGGCACTGTCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCG 11603 || || || | || |||||||| | | ||| | || || ||||| ||||| | | Sbjct 21451 GGTTGATACACCGCCAGAAAGGCACCATTGCCGCGCTGCGCCGGGTGGTTGAGCCATTTG 21510 Query 11604 GCTATCTCATTAACGTAAAGGAATGGTGGGAGACAAACGACCCGCCCGGAACCTTTCGCC 11663 | || | | ||| | ||||||||| | || || ||| |||||||||| || Sbjct 21511 GTTACTTGCTGCGCGTGATCGAATGGTGGCAAACCGGCGGTGTGCCGGGAACCTTTCACC 21570 Query 11664 TTGATATCGGTGTGCTGGAAAGCGGTATCACGGAGGAGATGTATCTGGAAATGGAACGGC 11723 | |||||||| |||| ||| | |||||| || || || | | | | || || || |||| Sbjct 21571 TGGATATCGGCGTGCAGGACAACGGTATTACTGAAGAAACCTTTTTAGAGATTGAGCGGC 21630 Query 11724 TGATTGCCGATGCCAAACC 11742 ||||||| || ||||| || Sbjct 21631 TGATTGCTGACGCCAAGCC 21649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98203372439040